myRT

myRT report for GCA_000488455.1_ASM48845v1

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Seq: KI532099.1 Escherichia coli 907889 genomic scaffold Scaffold59, whole genome shotgun sequence (24045 bp)
Overview 1 RT 1: 15062-17158 bp Neighborhood of RT #1 [15062, 17158] group_II_RT_mat RVT-GII RVT-GII GIIM Feature: gene Location: 15062-15349 bp Feature: gene Location: 15574-15906 bp Ori: ESD47556.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 15736-15898 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 5736-1 5898 bp Feature: gene Location: 15903-16094 bp Ori: ESD47557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15909-15963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5909-1 5963 bp Feature: gene Location: 16122-16643 bp Ori: ESD47558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16128-16410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 28-1 641 0 bp Feature: domain Description: GIIM Note: maturase Location: 16458-16638 bp Feature: domain Description: GIIM Note: maturase Location: 1 6458-1 6638 bp Feature: gene Location: 16713-16832 bp Feature: gene Location: 16847-17158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: KI532057.1 Escherichia coli 907889 genomic scaffold Scaffold368, whole genome shotgun sequence (9080 bp)
Overview 1 RT 1: 2761-6301 bp Neighborhood of RT #1 [2761, 6303] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Feature: gene Location: 2761-3822 bp Ori: ESD40757.1 Feature: domain Description: COG4584 Location: 2770-3160 bp Feature: domain Description: COG4584 Location: 2 770-3160 bp Feature: domain Description: COG4584 Location: 3274-3688 bp Feature: domain Description: COG4584 Location: 32 74-3688 bp Feature: gene Location: 3839-4594 bp Ori: ESD40758.1 Feature: domain Description: IstB_IS21_ATP Location: 3911-3995 bp Feature: domain Description: IstB_IS2 1_ATP Location: 3911-3995 bp Feature: domain Description: IstB_IS21 Location: 4004-4529 bp Feature: domain Description: IstB_IS2 1 Location: 4004-452 9 bp Feature: gene Location: 4736-5785 bp Ori: ESD40759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4754-5408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4754-5408 bp Feature: domain Description: GIIM Note: maturase Location: 5486-5711 bp Feature: domain Description: GIIM Note: maturase Location: 5486-5711 bp Feature: gene Location: 5901-6047 bp Ori: ESD40760.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5913-6024 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5913-602 4 bp Feature: gene Location: 6139-6303 bp Ori: ESD40761.1 Feature: domain Description: Dps Location: 6142-6301 bp Feature: domain Description: Dps Location: 6142 -6301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)

Seq: KI532156.1 Escherichia coli 907889 genomic scaffold Scaffold894, whole genome shotgun sequence (79556 bp)
Overview 1 RT 1: 57337-63368 bp Neighborhood of RT #1 [57337, 63505] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 57337-57477 bp Ori: ESD35183.1 Feature: domain Description: SfsB Location: 57346-57418 bp Feature: domain Description: SfsB Location: 573 46-57418 bp Feature: gene Location: 57474-57944 bp Feature: gene Location: 58291-61500 bp Ori: ESD35185.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 58819-59308 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 58819-593 08 bp Feature: domain Description: nitrilase Location: 60814-61411 bp Feature: domain Description: nitrilase Location: 60814-61411 bp Feature: gene Location: 61795-62598 bp Ori: ESD35186.1 Feature: domain Description: AbiEi_3_N Location: 61828-62089 bp Feature: domain Description: AbiEi_3 _N Location: 61828-62089 bp Feature: domain Description: AbiEi_3 Location: 62101-62557 bp Feature: domain Description: AbiEi_3 Location: 62101-62557 bp Feature: gene Location: 62585-63505 bp Ori: ESD35187.1 Feature: domain Description: AbiEii Location: 62627-63368 bp Feature: domain Description: AbiEii Location: 62627-63 3 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)