myRT

myRT report for GCA_000492995.1_Ente_cloa_complex_MGH_25_V1

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Seq: KI535636.1 (4898920 bp)
Overview 1 RT 1: 1322779-1330214 bp 2 RT 2: 2057448-2068464 bp Neighborhood of RT #1 [1322779, 1330234] FocA PRK09692 RVT-Retrons COG3515 VasL Neighborhood of RT #2 [2057448, 2068499] RMtype1_S_EcoEI-TRD1-CR1_like RMtype1_S_EcoEI-TRD1-CR1_like HsdM RVT-UG1 RT_Bac_retron_II Arm-DNA-bind_3 INT_P4_C DjlA Feature: gene Location: 1322779-1323708 bp Feature: domain Description: FocA Location: 1322872-1323649 bp Feature: domain Description: FocA Location: 1 322872-1 323649 bp Feature: gene Location: 1324087-1325184 bp Feature: domain Description: PRK09692 Location: 1324093-1325176 bp Feature: domain Description: PRK09692 Location: 1 324093-1 3251 76 bp Feature: gene Location: 1326227-1327411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1326377-1326956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 326377-1 326956 bp Feature: gene Location: 1327717-1327902 bp Feature: gene Location: 1328915-1330234 bp Feature: domain Description: COG3515 Location: 1328927-1329455 bp Feature: domain Description: COG351 5 Location: 1 328927-1 329455 bp Feature: domain Description: VasL Location: 1329782-1330214 bp Feature: domain Description: VasL Location: 1 329782-1 33021 4 bp Feature: gene Location: 2057448-2058683 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 2057463-2057943 bp Feature: domain Description: RMtype1 _S_EcoEI-TRD1 -CR1 _like Location: 2057463-2057943 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 2058441-2058585 bp Feature: domain Description: RMtype1 _S_EcoEI-TRD1 -CR1 _like Location: 2058441 -2058585 bp Feature: gene Location: 2058824-2061184 bp Feature: domain Description: HsdM Location: 2058848-2060249 bp Feature: domain Description: HsdM Location: 2058848-2060249 bp Feature: gene Location: 2061392-2065168 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2062010-2062517 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 206201 0-206251 7 bp Feature: domain Description: RT_Bac_retron_II Location: 2064323-2064479 bp Feature: domain Description: RT_Bac_retron_II Location: 2064323-2064479 bp Feature: gene Location: 2065461-2066768 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2065476-2065743 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2065476-2065743 bp Feature: domain Description: INT_P4_C Location: 2066160-2066709 bp Feature: domain Description: INT_P4_C Location: 20661 60-2066709 bp Feature: gene Location: 2067330-2068499 bp Feature: domain Description: DjlA Location: 2067987-2068464 bp Feature: domain Description: DjlA Location: 2067987-2068464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FocA (COG2116), PRK09692 (Integrase; provisional), RVT-Retrons, COG3515 (Predicted component of the type VI protein secretion system ), VasL (pfam12486), RMtype1_S_EcoEI-TRD1-CR1_like (cd17260), HsdM (COG0286), RVT-UG1, RT_Bac_retron_II (cd03487), Arm-DNA-bind_3 (pfam13356)
INT_P4_C (cd00801), DjlA (COG1076)

Seq: KI535649.1 (20086 bp)
Overview 1 RT 1: 11807-15996 bp Neighborhood of RT #1 [11807, 15996] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 11807-12478 bp Feature: domain Description: Plasmid_stab_B Location: 11822-12029 bp Feature: domain Description: Plasmid_stab_B Location: 1182 2 -12 02 9 bp Feature: domain Description: Plasmid_stab_B Location: 12134-12341 bp Feature: domain Description: Plasmid_stab_B Location: 12 134-12 341 bp Feature: gene Location: 12481-13452 bp Feature: domain Description: StbA Location: 12484-13429 bp Feature: domain Description: StbA Location: 12 484-1342 9 bp Feature: gene Location: 13701-15185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14103-14793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14103-14793 bp Feature: gene Location: 15239-15472 bp Feature: gene Location: 15601-15996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII