myRT

myRT report for GCA_000495595.1_berrySRB1

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Seq: AVFQ01000067.1 (13689 bp)
Overview 1 RT 1: 9622-12930 bp Neighborhood of RT #1 [9622, 12974] RVT-GII GIIM PemK_toxin PIN_Pae0151-like Feature: gene Location: 9622-9918 bp Feature: gene Location: 10025-10165 bp Feature: gene Location: 10438-11721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10621-11242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0621 -1 1 242 bp Feature: domain Description: GIIM Note: maturase Location: 11290-11509 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 290-1 1 509 bp Feature: gene Location: 11738-12001 bp Feature: domain Description: PemK_toxin Location: 11768-11981 bp Feature: domain Description: PemK_toxin Location: 1 1 768-1 1 981 bp Feature: gene Location: 12564-12974 bp Feature: domain Description: PIN_Pae0151-like Location: 12573-12930 bp Feature: domain Description: PIN_Pae01 51 -like Location: 1 2573-1 2930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PemK_toxin (pfam02452), PIN_Pae0151-like (cd09873)

Seq: AVFQ01000105.1 (3769 bp)
Overview 1 RT 1: 479-3588 bp Neighborhood of RT #1 [479, 3588] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 479-2674 bp Feature: domain Description: PinE Location: 524-1106 bp Feature: domain Description: PinE Location: 52 4-1106 bp Feature: domain Description: Zn_ribbon_recom Location: 1472-1643 bp Feature: domain Description: Zn_ribbon_recom Location: 1472 -1643 bp Feature: domain Description: HTH_17 Location: 2348-2426 bp Feature: domain Description: HTH_17 Location: 2 348-2 42 6 bp Feature: domain Description: HTH_17 Location: 2525-2642 bp Feature: domain Description: HTH_17 Location: 2 52 5-2 642 bp Feature: gene Location: 2871-3401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279-3348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 79-3348 bp Feature: gene Location: 3424-3588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII

Seq: AVFQ01000176.1 (9999 bp)
Overview 1 RT 1: 5949-9973 bp Neighborhood of RT #1 [5949, 9996] HsdM RMtype1_S_EcoAO83I-TRD1-CR1_like RMtype1_S_EcoAO83I-TRD1-CR1_like group_II_RT_mat RVT-UG19 Feature: gene Location: 5949-8063 bp Feature: domain Description: HsdM Location: 5979-8052 bp Feature: domain Description: HsdM Location: 5979-8052 bp Feature: gene Location: 8060-9112 bp Feature: domain Description: RMtype1_S_EcoAO83I-TRD1-CR1_like Location: 8081-8549 bp Feature: domain Description: RMtype1_S_EcoAO83 I-TRD1-CR1_like Location: 8081-8549 bp Feature: domain Description: RMtype1_S_EcoAO83I-TRD1-CR1_like Location: 8633-9086 bp Feature: domain Description: RMtype1_S_EcoAO83 I-TRD1-CR1_like Location: 863 3 -9086 bp Feature: gene Location: 9136-9996 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9241-9424 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9241-9424 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 9499-9973 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 9499-9973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_EcoAO83I-TRD1-CR1_like (cd17267), group_II_RT_mat (TIGR04416), RVT-UG19

Seq: AVFQ01000005.1 (4324 bp)
Overview 1 RT 1: 321-4322 bp Neighborhood of RT #1 [321, 4322] DUF11 DUF11 DUF11 DUF11 OmpA RVT-GII GIIM Feature: gene Location: 321-1955 bp Feature: domain Description: DUF11 Location: 660-867 bp Feature: domain Description: DUF11 Location: 660-867 bp Feature: domain Description: DUF11 Location: 969-1185 bp Feature: domain Description: DUF11 Location: 969-1185 bp Feature: domain Description: DUF11 Location: 1302-1521 bp Feature: domain Description: DUF11 Location: 1302-1521 bp Feature: domain Description: DUF11 Location: 1641-1878 bp Feature: domain Description: DUF11 Location: 164 1-1878 bp Feature: gene Location: 1973-2221 bp Feature: domain Description: OmpA Location: 2030-2213 bp Feature: domain Description: OmpA Location: 2030-2213 bp Feature: gene Location: 2439-3797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754-3414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754 -34 14 bp Feature: domain Description: GIIM Note: maturase Location: 3483-3702 bp Feature: domain Description: GIIM Note: maturase Location: 34 83-3702 bp Feature: gene Location: 3767-3985 bp Feature: gene Location: 4155-4322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF11 (pfam01345), OmpA (pfam00691), RVT-GII, GIIM (pfam08388)