myRT

myRT report for GCA_000495615.1_berryPSB1

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Seq: AVFR01000332.1 (2654 bp)
Overview 1 RT 1: 3-2041 bp Neighborhood of RT #1 [3, 2166] Cas_Cas1 RVT-CRISPR Feature: gene Location: 3-320 bp Feature: gene Location: 183-1241 bp Feature: domain Description: Cas_Cas1 Location: 204-1038 bp Feature: domain Description: Cas_Cas1 Location: 204-1 038 bp Feature: gene Location: 1234-2166 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1441-2041 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 441 -2041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas1 (pfam01867), RVT-CRISPR

Seq: AVFR01000471.1 (2227 bp)
Overview 1 RT 1: 1-2224 bp Neighborhood of RT #1 [1, 2224] RVT-DGRs Avd_like Feature: gene Location: 1-126 bp Feature: gene Location: 273-1370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 498-1143 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 498-1143 bp Feature: gene Location: 1357-1716 bp Feature: domain Description: Avd_like Location: 1381-1690 bp Feature: domain Description: Avd_like Location: 1381-1690 bp Feature: gene Location: 2042-2224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: AVFR01000938.1 (1322 bp)
Overview 1 RT 1: 103-1322 bp Neighborhood of RT #1 [103, 1321] HRDC Avd_like RVT-DGRs Feature: gene Location: 103-654 bp Feature: domain Description: HRDC Location: 364-556 bp Feature: domain Description: HRDC Location: 3 64-556 bp Feature: gene Location: 651-1010 bp Feature: domain Description: Avd_like Location: 684-987 bp Feature: domain Description: Avd_like Location: 684-987 bp Feature: gene Location: 1007-1321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1214-1322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1214-13 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HRDC (smart00341), Avd_like (cd16376), RVT-DGRs

Seq: AVFR01001314.1 (4896 bp)
Overview 1 RT 1: 2-3542 bp Neighborhood of RT #1 [2, 3652] RVT-GII DUF4041 T5orf172 Feature: gene Location: 2-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-34 1 bp Feature: gene Location: 1041-2315 bp Feature: gene Location: 2312-3652 bp Feature: domain Description: DUF4041 Location: 2828-2993 bp Feature: domain Description: DUF4 04 1 Location: 2828-2993 bp Feature: domain Description: T5orf172 Location: 3311-3542 bp Feature: domain Description: T5orf172 Location: 3311-354 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4041 (pfam13250), T5orf172 (smart00974)

Seq: AVFR01001228.1 (1416 bp)
Overview 1 RT 1: 208-619 bp Neighborhood of RT #1 [208, 885] RVT-GII Feature: gene Location: 208-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AVFR01000689.1 (8884 bp)
Overview 1 RT 1: 3381-8846 bp Neighborhood of RT #1 [3381, 8881] YfmG HRDC RVT-DGRs YfmG YfmG Feature: gene Location: 3381-6167 bp Feature: domain Description: YfmG Location: 5331-5994 bp Feature: domain Description: YfmG Location: 5331-5994 bp Feature: gene Location: 6210-6677 bp Feature: domain Description: HRDC Location: 6456-6648 bp Feature: domain Description: HRDC Location: 6 456 -6 6 48 bp Feature: gene Location: 6664-7668 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6877-7459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 877-7459 bp Feature: gene Location: 7661-7939 bp Feature: domain Description: YfmG Location: 7712-7844 bp Feature: domain Description: YfmG Location: 7712-7844 bp Feature: gene Location: 8057-8881 bp Feature: domain Description: YfmG Location: 8177-8846 bp Feature: domain Description: YfmG Location: 8177-8846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs

Seq: AVFR01000074.1 (3913 bp)
Overview 1 RT 1: 3-3845 bp Neighborhood of RT #1 [3, 3845] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III CRISPR_Cas2 Feature: gene Location: 3-2435 bp Feature: domain Description: CRISPR_Cas6 Location: 6-378 bp Feature: domain Description: CRISPR_Cas6 Location: 6-37 8 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 696-1296 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 696-1296 bp Feature: domain Description: Cas1_I-II-III Location: 1557-2397 bp Feature: domain Description: Cas1_I-II-III Location: 1557 -2397 bp Feature: gene Location: 2551-2829 bp Feature: domain Description: CRISPR_Cas2 Location: 2560-2773 bp Feature: domain Description: CRISPR_Cas2 Location: 2560-27 7 3 bp Feature: gene Location: 3654-3845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas2 (pfam09827)

Seq: AVFR01001315.1 (4891 bp)
Overview 1 RT 1: 1-2919 bp Neighborhood of RT #1 [1, 2948] RVT-DGRs MltB_2 PG_binding_1 PG_binding_1 Feature: gene Location: 1-795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7-589 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7-58 9 bp Feature: gene Location: 960-1211 bp Feature: gene Location: 1281-2948 bp Feature: domain Description: MltB_2 Location: 1581-2466 bp Feature: domain Description: MltB_2 Location: 158 1-2466 bp Feature: domain Description: PG_binding_1 Location: 2523-2676 bp Feature: domain Description: PG_binding_1 Location: 2523-2676 bp Feature: domain Description: PG_binding_1 Location: 2766-2919 bp Feature: domain Description: PG_binding_1 Location: 2766-2919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MltB_2 (TIGR02283), PG_binding_1 (pfam01471)

Seq: AVFR01000037.1 (4139 bp)
Overview 1 RT 1: 447-3623 bp Neighborhood of RT #1 [447, 3623] HTH_XRE RVT-Retrons DUF2384 Feature: gene Location: 447-602 bp Feature: gene Location: 631-939 bp Feature: domain Description: HTH_XRE Location: 643-808 bp Feature: domain Description: HTH_XRE Location: 643-808 bp Feature: gene Location: 897-1847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1074-1554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1074-1554 bp Feature: gene Location: 1870-3210 bp Feature: domain Description: DUF2384 Location: 3019-3118 bp Feature: domain Description: DUF2384 Location: 3019 -3118 bp Feature: gene Location: 3492-3623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DUF2384 (pfam09722)

Seq: AVFR01000696.1 (1733 bp)
Overview 1 RT 1: 1-1134 bp Neighborhood of RT #1 [1, 1274] RVT-DGRs Feature: gene Location: 1-261 bp Feature: gene Location: 282-1274 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 495-1134 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 495-1134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: AVFR01001361.1 (16030 bp)
Overview 1 RT 1: 308-11236 bp Neighborhood of RT #1 [308, 11442] CRISPR_Cas2 CRISPR_Cas6 RVT-CRISPR Cas_Cas1 TIGR03986 TIGR03986 RAMPs RAMPs Feature: gene Location: 308-3058 bp Feature: gene Location: 4068-4349 bp Feature: domain Description: CRISPR_Cas2 Location: 4077-4287 bp Feature: domain Description: CRISPR_Cas2 Location: 4077-4287 bp Feature: gene Location: 4349-7087 bp Feature: domain Description: CRISPR_Cas6 Location: 4823-4982 bp Feature: domain Description: CRISPR_Cas6 Location: 4823-4982 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5258-5861 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5258-5861 bp Feature: domain Description: Cas_Cas1 Location: 6113-6941 bp Feature: domain Description: Cas_Cas1 Location: 611 3-6941 bp Feature: gene Location: 7167-9839 bp Feature: domain Description: TIGR03986 Location: 7191-7626 bp Feature: domain Description: TIGR03986 Location: 7191-7626 bp Feature: domain Description: TIGR03986 Location: 8220-9261 bp Feature: domain Description: TIGR03986 Location: 8220-9261 bp Feature: gene Location: 9832-11442 bp Feature: domain Description: RAMPs Location: 9883-10420 bp Feature: domain Description: RAMPs Location: 9883-10420 bp Feature: domain Description: RAMPs Location: 10735-11236 bp Feature: domain Description: RAMPs Location: 10735-11 236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas_Cas1 (pfam01867), TIGR03986 (CRISPR-associated protein), RAMPs (pfam03787)

Seq: AVFR01000931.1 (1622 bp)
Overview 1 RT 1: 88-1540 bp Neighborhood of RT #1 [88, 1620] RVT_N RVT-GII Feature: gene Location: 88-537 bp Feature: gene Location: 574-1620 bp Feature: domain Description: RVT_N Location: 622-865 bp Feature: domain Description: RVT_N Location: 622-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: AVFR01000174.1 (3369 bp)
Overview 1 RT 1: 62-3341 bp Neighborhood of RT #1 [62, 3367] RVT-DGRs NACHT YfmG Feature: gene Location: 62-793 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 275-758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 275-758 bp Feature: gene Location: 830-3367 bp Feature: domain Description: NACHT Location: 878-1313 bp Feature: domain Description: NACHT Location: 878-13 13 bp Feature: domain Description: YfmG Location: 2429-3341 bp Feature: domain Description: YfmG Location: 2429-3341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, NACHT (pfam05729), YfmG (COG1262)