myRT

myRT report for GCA_000496715.1_H1130_v1

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Seq: AXBU01000004.1 (393622 bp)
Overview 1 RT 1: 389690-393001 bp Neighborhood of RT #1 [389690, 393024] RVT-DGRs Avd_like Feature: gene Location: 389690-390943 bp Feature: gene Location: 390943-391500 bp Feature: gene Location: 391257-392408 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 391470-392157 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 391 470-3921 57 bp Feature: gene Location: 392342-392575 bp Feature: gene Location: 392668-393024 bp Feature: domain Description: Avd_like Location: 392695-393001 bp Feature: domain Description: Avd_like Location: 392695-393001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: AXBU01000023.1 (158293 bp)
Overview 1 RT 1: 140619-147197 bp Neighborhood of RT #1 [140619, 147205] IS5 RVT_N RVT-GII GIIM RVT-GII GIIM IS5 COG3547 Feature: gene Location: 140619-141440 bp Feature: gene Location: 141816-142238 bp Feature: domain Description: IS5 Location: 141822-142212 bp Feature: domain Description: IS5 Location: 14182 2 -142 2 12 bp Feature: gene Location: 142347-143852 bp Feature: domain Description: RVT_N Location: 142425-142659 bp Feature: domain Description: RVT_N Location: 142 42 5-142 659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142704-143346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 704-143346 bp Feature: domain Description: GIIM Note: maturase Location: 143397-143631 bp Feature: domain Description: GIIM Note: maturase Location: 143397-143631 bp Feature: gene Location: 143893-144468 bp Feature: gene Location: 144541-145749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144709-145366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144709-145366 bp Feature: domain Description: GIIM Note: maturase Location: 145444-145666 bp Feature: domain Description: GIIM Note: maturase Location: 145444-145666 bp Feature: gene Location: 146284-146823 bp Feature: domain Description: IS5 Location: 146473-146800 bp Feature: domain Description: IS5 Location: 146473-146800 bp Feature: gene Location: 147017-147205 bp Feature: domain Description: COG3547 Location: 147032-147197 bp Feature: domain Description: COG3547 Location: 147032 -147197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: AXBU01000066.1 (114286 bp)
Overview 1 RT 1: 599-3933 bp Neighborhood of RT #1 [599, 3933] Avd_like RVT-DGRs Feature: gene Location: 599-955 bp Feature: domain Description: Avd_like Location: 626-932 bp Feature: domain Description: Avd_like Location: 626-93 2 bp Feature: gene Location: 1048-1281 bp Feature: gene Location: 1215-2366 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1428-2115 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1428-2115 bp Feature: gene Location: 2123-2680 bp Feature: gene Location: 2680-3933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: AXBU01000006.1 (452536 bp)
Overview 1 RT 1: 12241-17172 bp Neighborhood of RT #1 [12241, 17180] HTH_XRE RVT-Retrons CytC5 CytC5 Feature: gene Location: 12241-12666 bp Feature: gene Location: 12892-13146 bp Feature: domain Description: HTH_XRE Location: 12940-13099 bp Feature: domain Description: HTH_XRE Location: 1294 0-13099 bp Feature: gene Location: 13208-14587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13817-14123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13817-14 123 bp Feature: gene Location: 14641-14772 bp Feature: gene Location: 16296-17180 bp Feature: domain Description: CytC5 Location: 16455-16776 bp Feature: domain Description: CytC5 Location: 164 55-16776 bp Feature: domain Description: CytC5 Location: 16812-17172 bp Feature: domain Description: CytC5 Location: 16812-17172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, CytC5 (COG3245)

Seq: AXBU01000082.1 (161469 bp)
Overview 1 RT 1: 143653-152520 bp Neighborhood of RT #1 [143653, 152591] MalT RVT_N RVT-GII GIIM HNH DUF3701 Phage_int_SAM_1 Spo0J Feature: gene Location: 143653-146397 bp Feature: domain Description: MalT Location: 143710-146392 bp Feature: domain Description: MalT Location: 143710-146392 bp Feature: gene Location: 147175-147408 bp Feature: gene Location: 147482-149182 bp Feature: domain Description: RVT_N Location: 147536-147776 bp Feature: domain Description: RVT_N Location: 1475 36-147776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147824-148460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147824-148460 bp Feature: domain Description: GIIM Note: maturase Location: 148511-148745 bp Feature: domain Description: GIIM Note: maturase Location: 1485 11-148745 bp Feature: domain Description: HNH Note: nucleases Location: 149003-149126 bp Feature: domain Description: HNH Note: nucleases Location: 149003-149126 bp Feature: gene Location: 149960-151540 bp Feature: domain Description: DUF3701 Location: 150263-150512 bp Feature: domain Description: DUF3701 Location: 15 0263-15 05 12 bp Feature: domain Description: Phage_int_SAM_1 Location: 150674-150800 bp Feature: domain Description: Phage_int_SAM_1 Location: 15 0674-15 0800 bp Feature: gene Location: 151608-152591 bp Feature: domain Description: Spo0J Location: 151785-152520 bp Feature: domain Description: Spo0J Location: 15 1785 -15 25 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalT (COG2909), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF3701 (pfam12482), Phage_int_SAM_1 (pfam02899), Spo0J (COG1475)