myRT

myRT report for GCA_000497975.1_TB41

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Seq: AUTH01000043.1 (56048 bp)
Overview 1 RT 1: 53662-55941 bp Neighborhood of RT #1 [53662, 55958] RVT-UG2 COG3293 COG3293 Feature: gene Location: 53662-53862 bp Feature: gene Location: 53892-54254 bp Feature: gene Location: 54490-55035 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 54493-54739 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 54493-54739 bp Feature: gene Location: 55197-55958 bp Feature: domain Description: COG3293 Location: 55284-55515 bp Feature: domain Description: COG3293 Location: 55284-5551 5 bp Feature: domain Description: COG3293 Location: 55563-55941 bp Feature: domain Description: COG3293 Location: 55563-55941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, COG3293 (Transposase )

Seq: AUTH01000110.1 (127431 bp)
Overview 1 RT 1: 121539-126563 bp Neighborhood of RT #1 [121539, 127222] MmsB sbcB RVT-UG3 IstB_IS21_ATP IstB_IS21 COG4584 Feature: gene Location: 121539-122420 bp Feature: domain Description: MmsB Location: 121551-122400 bp Feature: domain Description: MmsB Location: 12 1551-12 2 400 bp Feature: gene Location: 122632-124077 bp Feature: domain Description: sbcB Note: exonuclease Location: 122647-124072 bp Feature: domain Description: sbcB Note: exonuclease Location: 12 2 647-12 4072 bp Feature: gene Location: 124315-124842 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 124570-124834 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 12 4570-12 4834 bp Feature: gene Location: 124908-125663 bp Feature: domain Description: IstB_IS21_ATP Location: 124980-125064 bp Feature: domain Description: IstB_IS2 1_ATP Location: 12 4980-12 5064 bp Feature: domain Description: IstB_IS21 Location: 125070-125598 bp Feature: domain Description: IstB_IS2 1 Location: 12 5070-12 5598 bp Feature: gene Location: 125678-127222 bp Feature: domain Description: COG4584 Location: 125801-126563 bp Feature: domain Description: COG4584 Location: 12 5801-12 6563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MmsB (COG2084), sbcB (PRK11779), RVT-UG3, IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: AUTH01000042.1 (23247 bp)
Overview 1 RT 1: 19523-23200 bp Neighborhood of RT #1 [19523, 23217] DUF927 RVT-UG2 COG3293 COG3293 Feature: gene Location: 19523-21217 bp Feature: domain Description: DUF927 Location: 19565-20336 bp Feature: domain Description: DUF927 Location: 19565-203 3 6 bp Feature: gene Location: 21485-21637 bp Feature: gene Location: 21764-22378 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 21962-22367 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 21962-223 67 bp Feature: gene Location: 22456-23217 bp Feature: domain Description: COG3293 Location: 22543-22774 bp Feature: domain Description: COG3 293 Location: 22543 -22774 bp Feature: domain Description: COG3293 Location: 22822-23200 bp Feature: domain Description: COG3 293 Location: 22822-23 200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF927 (pfam06048), RVT-UG2, COG3293 (Transposase )

Seq: AUTH01000056.1 (5676 bp)
Overview 1 RT 1: 39-4167 bp Neighborhood of RT #1 [39, 4826] HTH_32 PHA02517 HTH_Tnp_1 HTH_Tnp_1 RVT-UG8 RVT-UG3 COG4584 Feature: gene Location: 39-944 bp Feature: domain Description: HTH_32 Location: 60-225 bp Feature: domain Description: HTH_32 Location: 60-225 bp Feature: domain Description: PHA02517 Location: 246-783 bp Feature: domain Description: PHA02517 Location: 24 6-783 bp Feature: gene Location: 1079-1585 bp Feature: domain Description: HTH_Tnp_1 Location: 1085-1250 bp Feature: domain Description: HTH_Tnp_1 Location: 1085-1250 bp Feature: domain Description: HTH_Tnp_1 Location: 1274-1496 bp Feature: domain Description: HTH_Tnp_1 Location: 1274 -14 96 bp Feature: gene Location: 1606-2427 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2095-2401 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2095-24 01 bp Feature: gene Location: 2417-3046 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2423-2600 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 24 23-2600 bp Feature: gene Location: 3069-3221 bp Feature: gene Location: 3282-4826 bp Feature: domain Description: COG4584 Location: 3405-4167 bp Feature: domain Description: COG4 584 Location: 34 05-4 167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), RVT-UG8, RVT-UG3, COG4584 (Transposase )

Seq: AUTH01000027.1 (22721 bp)
Overview 1 RT 1: 13076-20698 bp Neighborhood of RT #1 [13076, 20700] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG5 nitrilase DarT Feature: gene Location: 13076-14548 bp Feature: domain Description: HsdM Location: 13082-14528 bp Feature: domain Description: HsdM Location: 13082-145 28 bp Feature: gene Location: 14548-16323 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 14902-15415 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 14902-15 415 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 15751-16306 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 15 75 1-16306 bp Feature: gene Location: 16340-19549 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16865-17390 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 16865 -17390 bp Feature: domain Description: nitrilase Location: 18866-19454 bp Feature: domain Description: nitrilase Location: 18866-1945 4 bp Feature: gene Location: 19559-20020 bp Feature: gene Location: 20023-20700 bp Feature: domain Description: DarT Location: 20053-20698 bp Feature: domain Description: DarT Location: 2005 3-20698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG5, nitrilase (cl11424), DarT

Seq: AUTH01000054.1 (15391 bp)
Overview 1 RT 1: 52-4351 bp Neighborhood of RT #1 [52, 4351] HTH_Tnp_1 HTH_Tnp_1 HTH_32 PHA02517 RVT-UG8 MhpC Feature: gene Location: 52-558 bp Feature: domain Description: HTH_Tnp_1 Location: 58-223 bp Feature: domain Description: HTH_Tnp_1 Location: 58-223 bp Feature: domain Description: HTH_Tnp_1 Location: 247-469 bp Feature: domain Description: HTH_Tnp_1 Location: 247-46 9 bp Feature: gene Location: 693-1598 bp Feature: domain Description: HTH_32 Location: 714-879 bp Feature: domain Description: HTH_32 Location: 714-879 bp Feature: domain Description: PHA02517 Location: 900-1437 bp Feature: domain Description: PHA02517 Location: 900-1437 bp Feature: gene Location: 1624-2829 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1630-1786 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16 30-1786 bp Feature: gene Location: 3060-3872 bp Feature: domain Description: MhpC Location: 3141-3852 bp Feature: domain Description: MhpC Location: 3141-3852 bp Feature: gene Location: 4013-4351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG8, MhpC (COG0596)