myRT

myRT report for GCA_000498575.2_MS-3

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Seq: AWSQ01000012.1 (82666 bp)
Overview 1 RT 1: 7962-15253 bp 2 RT 2: 66485-68797 bp Neighborhood of RT #1 [7962, 15300] outer_NodT RVT-GII rve_3 IS5 RVT-GII GIIM IS5 HTH_32 DDE_3 Neighborhood of RT #2 [66485, 68814] COG4584 DDE_3 RVT-GII recomb_XerD conj_conj_conj_TIGR03757 Feature: gene Location: 7962-9530 bp Feature: domain Description: outer_NodT Location: 8079-9447 bp Feature: domain Description: outer_NodT Location: 8079-9447 bp Feature: gene Location: 9540-9809 bp Feature: gene Location: 9967-10653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10003-10303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0003-1 0303 bp Feature: domain Description: rve_3 Location: 10432-10627 bp Feature: domain Description: rve_3 Location: 1 0432-1 0627 bp Feature: gene Location: 10990-11523 bp Feature: domain Description: IS5 Location: 11179-11512 bp Feature: domain Description: IS5 Location: 1 1 1 79-1 1 51 2 bp Feature: gene Location: 11744-12496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11768-11990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 768-1 1 990 bp Feature: domain Description: GIIM Note: maturase Location: 12044-12275 bp Feature: domain Description: GIIM Note: maturase Location: 1 2044-1 2275 bp Feature: gene Location: 12587-13027 bp Feature: domain Description: IS5 Location: 12599-12995 bp Feature: domain Description: IS5 Location: 1 2599-1 2995 bp Feature: gene Location: 14380-15300 bp Feature: domain Description: HTH_32 Location: 14533-14710 bp Feature: domain Description: HTH_32 Location: 1 4533-1 471 0 bp Feature: domain Description: DDE_3 Location: 14866-15253 bp Feature: domain Description: DDE_3 Location: 1 4866-1 5253 bp Feature: gene Location: 66485-67120 bp Feature: domain Description: COG4584 Location: 66593-67118 bp Feature: domain Description: COG4584 Location: 66593-671 1 8 bp Feature: gene Location: 67283-67453 bp Feature: domain Description: DDE_3 Location: 67286-67385 bp Feature: domain Description: DDE_3 Location: 67286-67385 bp Feature: gene Location: 67555-67791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67570-67687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67570-67687 bp Feature: gene Location: 67913-68092 bp Feature: domain Description: recomb_XerD Location: 67928-68018 bp Feature: domain Description: recomb_XerD Location: 67928-6801 8 bp Feature: gene Location: 68386-68814 bp Feature: domain Description: conj_conj_conj_TIGR03757 Location: 68473-68797 bp Feature: domain Description: conj_conj_conj_TIGR03757 Location: 68473-68797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT outer_NodT (TIGR01845), RVT-GII, rve_3 (pfam13683), IS5 (COG3039), GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358), COG4584 (Transposase ), recomb_XerD (TIGR02225), conj_conj_conj_TIGR03757

Seq: AWSQ01000001.1 (1851393 bp)
Overview 1 RT 1: 23007-31849 bp 2 RT 2: 846438-857278 bp Neighborhood of RT #1 [23007, 31860] NTP_transferase_like_1 COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Neighborhood of RT #2 [846438, 857280] PRK05579 PRK00024 RVT-G2L4 RVT-Retrons Trypsin_2 DUF262 PDDEXK_4 Feature: gene Location: 23007-23678 bp Feature: domain Description: NTP_transferase_like_1 Location: 23013-23649 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 3013-2 3649 bp Feature: gene Location: 23675-24739 bp Feature: domain Description: COG3178 Location: 23768-24731 bp Feature: domain Description: COG3178 Location: 2 3768-2 4731 bp Feature: gene Location: 25977-27674 bp Feature: domain Description: RVT_N Location: 26034-26274 bp Feature: domain Description: RVT_N Location: 2 6034-2 62 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26322-26958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 632 2 -2 6958 bp Feature: domain Description: GIIM Note: maturase Location: 27009-27243 bp Feature: domain Description: GIIM Note: maturase Location: 2 7009-2 72 43 bp Feature: domain Description: HNH Note: nucleases Location: 27495-27633 bp Feature: domain Description: HNH Note: nucleases Location: 2 7495-2 7633 bp Feature: gene Location: 27822-30584 bp Feature: domain Description: LptD Location: 28125-30567 bp Feature: domain Description: LptD Location: 2 812 5-30567 bp Feature: gene Location: 30523-31860 bp Feature: domain Description: PRK10770 Location: 30646-31849 bp Feature: domain Description: PRK10770 Location: 30646-31849 bp Feature: gene Location: 846438-847646 bp Feature: domain Description: PRK05579 Location: 846444-847635 bp Feature: domain Description: PRK05579 Location: 846444-847635 bp Feature: gene Location: 847621-848460 bp Feature: domain Description: PRK00024 Location: 847831-848341 bp Feature: domain Description: PRK0002 4 Location: 847831-848341 bp Feature: gene Location: 848573-849853 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 848819-849404 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 848819-849404 bp Feature: gene Location: 850572-850886 bp Feature: gene Location: 851110-851292 bp Feature: gene Location: 851617-853413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851764-852367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851764-852 367 bp Feature: domain Description: Trypsin_2 Location: 852760-853180 bp Feature: domain Description: Trypsin_2 Location: 852 760-853180 bp Feature: gene Location: 854025-855164 bp Feature: domain Description: DUF262 Location: 854058-854502 bp Feature: domain Description: DUF2 62 Location: 854058-854502 bp Feature: gene Location: 856795-857280 bp Feature: domain Description: PDDEXK_4 Location: 856858-857278 bp Feature: domain Description: PDDEXK_4 Location: 856858-8572 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), PRK00024 (DNA repair protein RadC)
RVT-G2L4, RVT-Retrons, Trypsin_2 (pfam13365), DUF262 (pfam03235), PDDEXK_4 (pfam14281)