myRT

myRT report for GCA_000498835.2_LAU-EC4

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Seq: AYOP01000007.1 Escherichia coli LAU-EC4 contig_7, whole genome shotgun sequence (163241 bp)
Overview 1 RT 1: 28990-35233 bp Neighborhood of RT #1 [28990, 35370] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28990-29256 bp Feature: domain Description: Phage_integrase Location: 29056-29152 bp Feature: domain Description: Phage_integrase Location: 29056-291 52 bp Feature: gene Location: 29339-29809 bp Feature: gene Location: 30156-33365 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30684-31173 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30684-31 1 73 bp Feature: domain Description: nitrilase Location: 32679-33276 bp Feature: domain Description: nitrilase Location: 32679-33276 bp Feature: gene Location: 33660-34463 bp Feature: domain Description: AbiEi_3_N Location: 33693-33954 bp Feature: domain Description: AbiEi_3_N Location: 33693-33954 bp Feature: domain Description: AbiEi_3 Location: 33966-34422 bp Feature: domain Description: AbiEi_3 Location: 33966-34422 bp Feature: gene Location: 34450-35370 bp Feature: domain Description: AbiEii Location: 34492-35233 bp Feature: domain Description: AbiEii Location: 34492-35233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: AYOP01000035.1 Escherichia coli LAU-EC4 contig_35, whole genome shotgun sequence (48212 bp)
Overview 1 RT 1: 24385-28676 bp Neighborhood of RT #1 [24385, 28676] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24385-25647 bp Feature: domain Description: YesM Location: 24898-25639 bp Feature: domain Description: YesM Location: 2 4898-2 5639 bp Feature: gene Location: 25677-25847 bp Feature: gene Location: 26197-26718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26203-26485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 03-2 6485 bp Feature: domain Description: GIIM Note: maturase Location: 26533-26713 bp Feature: domain Description: GIIM Note: maturase Location: 2 6533-2 6713 bp Feature: gene Location: 26746-27285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27076-27154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7076-2 7154 bp Feature: gene Location: 27316-27513 bp Feature: gene Location: 27771-28676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: AYOP01000070.1 Escherichia coli LAU-EC4 contig_70, whole genome shotgun sequence (6828 bp)
Overview 1 RT 1: 1364-5003 bp Neighborhood of RT #1 [1364, 5003] PRK15442 RVT-GII ParE_toxin Feature: gene Location: 1364-2224 bp Feature: domain Description: PRK15442 Location: 1373-2222 bp Feature: domain Description: PRK15442 Location: 13 73 -2222 bp Feature: gene Location: 2558-2830 bp Feature: gene Location: 2841-4256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3126-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 126-3 813 bp Feature: gene Location: 4507-4710 bp Feature: domain Description: ParE_toxin Location: 4522-4705 bp Feature: domain Description: ParE_toxin Location: 4522-4705 bp Feature: gene Location: 4836-5003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), RVT-GII, ParE_toxin (pfam05016)

Seq: AYOP01000102.1 Escherichia coli LAU-EC4 contig_102, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)