myRT

myRT report for GCA_000505545.1_draft_genome_sequence_of_Kurthia_huakuii_LAM0618

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Seq: AYTB01000017.1 (234215 bp)
Overview 1 RT 1: 76838-83104 bp Neighborhood of RT #1 [76838, 83109] pcrA RVT-GII HNHc pcrA ligA Feature: gene Location: 76838-77029 bp Feature: gene Location: 77020-78150 bp Feature: domain Description: pcrA Location: 77026-78121 bp Feature: domain Description: pcrA Location: 77026-781 21 bp Feature: gene Location: 78768-80546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79062-79812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79062-7981 2 bp Feature: domain Description: HNHc Note: nucleases Location: 80346-80439 bp Feature: domain Description: HNHc Note: nucleases Location: 80346-80439 bp Feature: gene Location: 80614-81090 bp Feature: domain Description: pcrA Location: 80653-81079 bp Feature: domain Description: pcrA Location: 80653-81 079 bp Feature: gene Location: 81103-83109 bp Feature: domain Description: ligA Location: 81118-83104 bp Feature: domain Description: ligA Location: 81 1 1 8-831 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII, HNHc (smart00507), ligA (PRK14351)

Seq: AYTB01000018.1 (90307 bp)
Overview 1 RT 1: 41475-44906 bp Neighborhood of RT #1 [41475, 45040] HTH_36 HTH_XRE RVT-UG2 DUF4096 Feature: gene Location: 41475-42113 bp Feature: domain Description: HTH_36 Location: 41538-41697 bp Feature: domain Description: HTH_36 Location: 41538-41697 bp Feature: gene Location: 42326-42697 bp Feature: domain Description: HTH_XRE Location: 42338-42509 bp Feature: domain Description: HTH_XRE Location: 42 338-42 509 bp Feature: gene Location: 42725-44107 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 42929-43754 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 42 92 9-43754 bp Feature: gene Location: 44292-44489 bp Feature: gene Location: 44633-45040 bp Feature: domain Description: DUF4096 Location: 44696-44906 bp Feature: domain Description: DUF4096 Location: 44696-44906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), HTH_XRE (smart00530), RVT-UG2, DUF4096 (pfam13340)

Seq: AYTB01000007.1 (492901 bp)
Overview 1 RT 1: 42510-47732 bp 2 RT 2: 293019-300673 bp Neighborhood of RT #1 [42510, 47732] addA_Gpos RVT-GII Intron_maturas2 HNHc addA_Gpos Neighborhood of RT #2 [293019, 300696] polC RVT-GII HNHc polC RimP Feature: gene Location: 42510-42701 bp Feature: domain Description: addA_Gpos Location: 42603-42690 bp Feature: domain Description: addA_Gpos Location: 42603 -42690 bp Feature: gene Location: 43148-43285 bp Feature: gene Location: 43317-45125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43581-44406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 581-44406 bp Feature: domain Description: Intron_maturas2 Location: 44481-44844 bp Feature: domain Description: Intron_maturas2 Location: 44481-44844 bp Feature: domain Description: HNHc Note: nucleases Location: 44928-45096 bp Feature: domain Description: HNHc Note: nucleases Location: 44928-45096 bp Feature: gene Location: 45313-47577 bp Feature: domain Description: addA_Gpos Location: 45316-47566 bp Feature: domain Description: addA_Gpos Location: 453 16-47566 bp Feature: gene Location: 47595-47732 bp Feature: gene Location: 293019-296033 bp Feature: domain Description: polC Location: 293112-296016 bp Feature: domain Description: polC Location: 293 112-296016 bp Feature: gene Location: 296364-296492 bp Feature: gene Location: 296737-298563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297043-297739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297043 -29773 9 bp Feature: domain Description: HNHc Note: nucleases Location: 298291-298444 bp Feature: domain Description: HNHc Note: nucleases Location: 298291-298444 bp Feature: gene Location: 298639-300075 bp Feature: domain Description: polC Location: 298675-300073 bp Feature: domain Description: polC Location: 298675-3 00073 bp Feature: gene Location: 300208-300696 bp Feature: domain Description: RimP Location: 300214-300673 bp Feature: domain Description: RimP Location: 3 00214-3 00673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT addA_Gpos (TIGR02785), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), polC (TIGR00354), RimP (COG0779)