myRT

myRT report for GCA_000506585.2_WGS_Escherichia_coli_EC8

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Seq: AYNH01000023.1 (81993 bp)
Overview 1 RT 1: 41801-45683 bp Neighborhood of RT #1 [41801, 45688] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 41801-42517 bp Feature: domain Description: rph Location: 41804-42512 bp Feature: domain Description: rph Location: 41 804-4251 2 bp Feature: gene Location: 42568-43224 bp Feature: domain Description: pyrE Location: 42586-43219 bp Feature: domain Description: pyrE Location: 42586-4321 9 bp Feature: gene Location: 43522-44481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43657-44206 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43657-44206 bp Feature: gene Location: 44527-45123 bp Feature: domain Description: slmA Location: 44533-45109 bp Feature: domain Description: slmA Location: 44533-451 09 bp Feature: gene Location: 45230-45688 bp Feature: domain Description: dut Location: 45236-45683 bp Feature: domain Description: dut Location: 45236-45683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: AYNH01000025.1 (64090 bp)
Overview 1 RT 1: 2480-6480 bp Neighborhood of RT #1 [2480, 6488] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2480-3841 bp Feature: domain Description: DcuC Location: 2483-3815 bp Feature: domain Description: DcuC Location: 2 483-3815 bp Feature: gene Location: 3894-4265 bp Feature: gene Location: 4487-4933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793-4895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4793-4895 bp Feature: gene Location: 4981-5130 bp Feature: gene Location: 5457-6488 bp Feature: domain Description: Asparaginase_2 Location: 5547-6480 bp Feature: domain Description: Asparaginase_2 Location: 5547-6480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: AYNH01000038.1 (34880 bp)
Overview 1 RT 1: 4006-8248 bp Neighborhood of RT #1 [4006, 8248] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4006-4239 bp Feature: domain Description: DUF905 Location: 4036-4234 bp Feature: domain Description: DUF905 Location: 403 6-423 4 bp Feature: gene Location: 4297-4737 bp Feature: domain Description: PRK13732 Location: 4303-4735 bp Feature: domain Description: PRK13 73 2 Location: 43 03 -473 5 bp Feature: gene Location: 4932-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5199-6030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5199-603 0 bp Feature: domain Description: Intron_maturas2 Location: 6144-6402 bp Feature: domain Description: Intron_maturas2 Location: 6144-6402 bp Feature: domain Description: HNHc Note: nucleases Location: 6576-6738 bp Feature: domain Description: HNHc Note: nucleases Location: 6576-673 8 bp Feature: gene Location: 7550-7786 bp Feature: gene Location: 7787-8248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)