myRT

myRT report for GCA_000508925.1_ASM50892v1

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Seq: BAHT02000236.1 (23851 bp)
Overview 1 RT 1: 3-5292 bp Neighborhood of RT #1 [3, 5294] RVT-UG2 DUF2971 guaA Feature: gene Location: 3-278 bp Feature: gene Location: 732-2099 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 987-1800 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 987-1 800 bp Feature: gene Location: 2707-3597 bp Feature: domain Description: DUF2971 Location: 3031-3304 bp Feature: domain Description: DUF2971 Location: 3031 -3304 bp Feature: gene Location: 3717-5294 bp Feature: domain Description: guaA Location: 3759-5292 bp Feature: domain Description: guaA Location: 3759-5292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DUF2971 (pfam11185), guaA (PRK00074)

Seq: BAHT02000213.1 (78357 bp)
Overview 1 RT 1: 695-4923 bp Neighborhood of RT #1 [695, 5069] Creatininase AbiEii RVT_N RVT-GII GIIM AbiEii COG5340 Feature: gene Location: 695-1426 bp Feature: domain Description: Creatininase Location: 722-1400 bp Feature: domain Description: Creatininase Location: 72 2 -1400 bp Feature: gene Location: 1665-2216 bp Feature: domain Description: AbiEii Location: 1692-2184 bp Feature: domain Description: AbiEii Location: 1692 -2 184 bp Feature: gene Location: 2359-3861 bp Feature: domain Description: RVT_N Location: 2434-2677 bp Feature: domain Description: RVT_N Location: 2 434-2 677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722-3364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 2 -3364 bp Feature: domain Description: GIIM Note: maturase Location: 3421-3649 bp Feature: domain Description: GIIM Note: maturase Location: 342 1-3649 bp Feature: gene Location: 4387-4536 bp Feature: domain Description: AbiEii Location: 4399-4516 bp Feature: domain Description: AbiEii Location: 4399-4516 bp Feature: gene Location: 4623-5069 bp Feature: domain Description: COG5340 Location: 4650-4923 bp Feature: domain Description: COG5340 Location: 4650-492 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Creatininase (pfam02633), AbiEii (pfam08843), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5340 (Transcriptional regulator, predicted component of viral defense system )

Seq: BAHT02000171.1 (28129 bp)
Overview 1 RT 1: 13134-16456 bp 2 RT 2: 21086-27877 bp Neighborhood of RT #1 [13134, 16461] RVT-GII GIIM Doc Neighborhood of RT #2 [21086, 27888] PRK13857 TraG-D_C RVT-GII RVT-GII RVT-GII group_II_RT_mat T4SS-DNA_transf Feature: gene Location: 13134-13736 bp Feature: gene Location: 13749-14156 bp Feature: gene Location: 14257-15438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14365-14980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 65-14980 bp Feature: domain Description: GIIM Note: maturase Location: 15040-15271 bp Feature: domain Description: GIIM Note: maturase Location: 15040-15271 bp Feature: gene Location: 15522-15671 bp Feature: gene Location: 16084-16461 bp Feature: domain Description: Doc Location: 16093-16456 bp Feature: domain Description: Doc Location: 16093 -16456 bp Feature: gene Location: 21086-21427 bp Feature: domain Description: PRK13857 Location: 21173-21410 bp Feature: domain Description: PRK13 857 Location: 21173 -21410 bp Feature: gene Location: 21424-22113 bp Feature: domain Description: TraG-D_C Location: 21529-21838 bp Feature: domain Description: TraG-D_C Location: 21529-2183 8 bp Feature: gene Location: 22123-23271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22213-22426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22213 -22426 bp Feature: gene Location: 23307-24032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23616-24003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 616-24003 bp Feature: gene Location: 24965-26776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25229-26060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25229-26060 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 26270-26402 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 26270-26402 bp Feature: gene Location: 26778-26918 bp Feature: gene Location: 27364-27888 bp Feature: domain Description: T4SS-DNA_transf Location: 27415-27877 bp Feature: domain Description: T4SS-DNA_transf Location: 27415-27877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Doc (COG3654), PRK13857 (pilin major subunit VirB2), TraG-D_C (pfam12696), group_II_RT_mat (TIGR04416), T4SS-DNA_transf (pfam02534)

Seq: BAHT02000191.1 (58752 bp)
Overview 1 RT 1: 21415-30836 bp Neighborhood of RT #1 [21415, 30841] Glyco_hydro_115 GH115_C PBP2_AlgQ_like_4 RVT-GII GIIM RVT-GII GIIM UgpE Feature: gene Location: 21415-24336 bp Feature: domain Description: Glyco_hydro_115 Location: 21925-23002 bp Feature: domain Description: Glyco_hydro_115 Location: 21925-23002 bp Feature: domain Description: GH115_C Location: 23788-24316 bp Feature: domain Description: GH115_C Location: 23788-24 316 bp Feature: gene Location: 24450-26135 bp Feature: domain Description: PBP2_AlgQ_like_4 Location: 24624-26109 bp Feature: domain Description: PBP2_AlgQ_like_4 Location: 24 624 -26109 bp Feature: gene Location: 26349-27668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26622-27279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26622-27279 bp Feature: domain Description: GIIM Note: maturase Location: 27360-27579 bp Feature: domain Description: GIIM Note: maturase Location: 27360-27579 bp Feature: gene Location: 27643-27888 bp Feature: gene Location: 27959-28147 bp Feature: gene Location: 28169-29467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28424-29114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284 24 -29114 bp Feature: domain Description: GIIM Note: maturase Location: 29195-29399 bp Feature: domain Description: GIIM Note: maturase Location: 29195-29399 bp Feature: gene Location: 29591-29830 bp Feature: gene Location: 29969-30841 bp Feature: domain Description: UgpE Location: 29990-30836 bp Feature: domain Description: UgpE Location: 29990-30836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_115 (pfam15979), GH115_C (pfam17829), PBP2_AlgQ_like_4 (cd13583), RVT-GII, GIIM (pfam08388), UgpE (COG0395)

Seq: BAHT02000259.1 (2503 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2225 -2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BAHT02000004.1 (5900 bp)
Overview 1 RT 1: 3690-5871 bp Neighborhood of RT #1 [3690, 5897] RVT-Retrons F420_ligase Feature: gene Location: 3690-3902 bp Feature: gene Location: 3959-4429 bp Feature: gene Location: 4283-5302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4448-5003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4448-5003 bp Feature: gene Location: 5377-5532 bp Feature: gene Location: 5643-5897 bp Feature: domain Description: F420_ligase Location: 5709-5871 bp Feature: domain Description: F420_ligase Location: 5709-5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, F420_ligase (pfam01996)