myRT

myRT report for GCA_000510425.1_EnATCC33099v1.0

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Seq: AZKM01000003.1 (127979 bp)
Overview 1 RT 1: 1-8988 bp Neighborhood of RT #1 [1, 8993] DDE_Tnp_ISL3 HTH_28 rve RVT-Retrons HTH_29 rve addB_Gpos Feature: gene Location: 1-636 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 46-625 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 46-625 bp Feature: gene Location: 948-1634 bp Feature: domain Description: HTH_28 Location: 1083-1230 bp Feature: domain Description: HTH_28 Location: 1 083-1 230 bp Feature: domain Description: rve Location: 1461-1629 bp Feature: domain Description: rve Location: 1 461 -1 629 bp Feature: gene Location: 1980-3647 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2100-2700 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 00-2700 bp Feature: gene Location: 4277-5155 bp Feature: domain Description: HTH_29 Location: 4322-4490 bp Feature: domain Description: HTH_29 Location: 4322-4490 bp Feature: domain Description: rve Location: 4697-5084 bp Feature: domain Description: rve Location: 4697-5084 bp Feature: gene Location: 5562-8993 bp Feature: domain Description: addB_Gpos Location: 5598-8988 bp Feature: domain Description: addB_Gpos Location: 5598-8988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), HTH_28 (pfam13518), rve (pfam00665), RVT-Retrons, HTH_29 (pfam13551), addB_Gpos (TIGR02773)

Seq: AZKM01000022.1 (58784 bp)
Overview 1 RT 1: 13417-25586 bp 2 RT 2: 50290-55629 bp Neighborhood of RT #1 [13417, 25834] YtxK COG4646 RVT-GII COG4646 HepA HTH_XRE CtkA Neighborhood of RT #2 [50290, 55646] Transglut_core RVT-GII GIIM AcrR MdlB Feature: gene Location: 13417-15036 bp Feature: gene Location: 15089-19381 bp Feature: domain Description: YtxK Location: 16775-17513 bp Feature: domain Description: YtxK Location: 16775-17513 bp Feature: domain Description: COG4646 Location: 17588-19361 bp Feature: domain Description: COG4646 Location: 17588-19361 bp Feature: gene Location: 20088-21893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20400-21096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0400-2 1096 bp Feature: gene Location: 22006-24135 bp Feature: domain Description: COG4646 Location: 22078-22831 bp Feature: domain Description: COG4646 Location: 2 2 078-2 2 831 bp Feature: domain Description: HepA Location: 23182-23368 bp Feature: domain Description: HepA Location: 2 3182 -2 3368 bp Feature: gene Location: 24377-25834 bp Feature: domain Description: HTH_XRE Location: 24476-24632 bp Feature: domain Description: HTH_XRE Location: 2 4476-2 4632 bp Feature: domain Description: CtkA Location: 25142-25586 bp Feature: domain Description: CtkA Location: 2 5142 -2 5586 bp Feature: gene Location: 50290-51000 bp Feature: domain Description: Transglut_core Location: 50386-50701 bp Feature: domain Description: Transglut_core Location: 50386-50701 bp Feature: gene Location: 51015-51158 bp Feature: gene Location: 51736-52995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51940-52555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51940-52 555 bp Feature: domain Description: GIIM Note: maturase Location: 52615-52846 bp Feature: domain Description: GIIM Note: maturase Location: 52 615-52 846 bp Feature: gene Location: 53077-53682 bp Feature: domain Description: AcrR Location: 53107-53494 bp Feature: domain Description: AcrR Location: 53107-53494 bp Feature: gene Location: 53721-55646 bp Feature: domain Description: MdlB Location: 53931-55629 bp Feature: domain Description: MdlB Location: 53931-5562 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HepA (COG0553), HTH_XRE (smart00530), CtkA (cd17792), Transglut_core (pfam01841), GIIM (pfam08388), AcrR (COG1309), MdlB (COG1132)

Seq: AZKM01000006.1 (193896 bp)
Overview 1 RT 1: 117504-121478 bp Neighborhood of RT #1 [117504, 121478] RVT-UG15 COG2865 Feature: gene Location: 117504-117785 bp Feature: gene Location: 117804-118130 bp Feature: gene Location: 118169-119698 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 118622-119021 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 118622-119021 bp Feature: gene Location: 119708-121123 bp Feature: domain Description: COG2865 Location: 119711-121118 bp Feature: domain Description: COG2865 Location: 119711-121118 bp Feature: gene Location: 121143-121478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: AZKM01000019.1 (118376 bp)
Overview 1 RT 1: 101743-107195 bp Neighborhood of RT #1 [101743, 107344] SSB_OBF Cyt_C5_DNA_methylase RVT-GII GIIM KOG1003 T4SS-DNA_transf Feature: gene Location: 101743-102087 bp Feature: domain Description: SSB_OBF Location: 101764-102007 bp Feature: domain Description: SSB_OBF Location: 101764 -102007 bp Feature: gene Location: 102196-103161 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 102205-103117 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 102205-103117 bp Feature: gene Location: 103484-104737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103688-104303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103688-104 303 bp Feature: domain Description: GIIM Note: maturase Location: 104360-104588 bp Feature: domain Description: GIIM Note: maturase Location: 104 360-104 588 bp Feature: gene Location: 105280-105429 bp Feature: domain Description: KOG1003 Location: 105289-105403 bp Feature: domain Description: KOG1003 Location: 105289-1054 03 bp Feature: gene Location: 105491-107344 bp Feature: domain Description: T4SS-DNA_transf Location: 105968-107195 bp Feature: domain Description: T4 SS-DNA_transf Location: 105968-107195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), Cyt_C5_DNA_methylase (cl30459), RVT-GII, GIIM (pfam08388), KOG1003 (KOG1003, Actin filament-coating protein tropomyosin ), T4SS-DNA_transf (pfam02534)