myRT

myRT report for GCA_000513195.1_AP1

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Seq: CBVI010000001.1 (436111 bp)
Overview 1 RT 1: 190001-195894 bp Neighborhood of RT #1 [190001, 195902] def COG1237 RVT-Retrons MFS_DtpA_like HptA Feature: gene Location: 190001-190585 bp Feature: domain Description: def Location: 190004-190535 bp Feature: domain Description: def Location: 1 90004-1 90535 bp Feature: gene Location: 190675-191481 bp Feature: domain Description: COG1237 Location: 190678-191476 bp Feature: domain Description: COG1 237 Location: 1 90678-1 91 476 bp Feature: gene Location: 192349-193470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192661-193213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 92661 -1 9321 3 bp Feature: gene Location: 193788-195326 bp Feature: domain Description: MFS_DtpA_like Location: 193809-195297 bp Feature: domain Description: MFS_DtpA_like Location: 1 93809-1 95297 bp Feature: gene Location: 195366-195902 bp Feature: domain Description: HptA Location: 195384-195894 bp Feature: domain Description: HptA Location: 1 95384-1 95894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT def (PRK00150), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II ), RVT-Retrons, MFS_DtpA_like (cd17346), HptA (COG0634)

Seq: CBVI010000109.1 (14295 bp)
Overview 1 RT 1: 1-5612 bp Neighborhood of RT #1 [1, 5626] RVT-GII GIIM SUL1 Feature: gene Location: 1-1272 bp Feature: gene Location: 1906-3177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110-2767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 110-2 767 bp Feature: domain Description: GIIM Note: maturase Location: 2851-3058 bp Feature: domain Description: GIIM Note: maturase Location: 2 851-3058 bp Feature: gene Location: 3487-3771 bp Feature: gene Location: 3947-5626 bp Feature: domain Description: SUL1 Location: 3983-5612 bp Feature: domain Description: SUL1 Location: 3983-5612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SUL1 (COG0659)

Seq: CBVI010000159.1 (20046 bp)
Overview 1 RT 1: 7736-12675 bp Neighborhood of RT #1 [7736, 12692] BF2867_like_N DUF1566 Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 7736-9388 bp Feature: domain Description: BF2867_like_N Location: 7778-8285 bp Feature: domain Description: BF2867_like_N Location: 7778-8285 bp Feature: domain Description: DUF1566 Location: 9113-9374 bp Feature: domain Description: DUF1566 Location: 9113 -93 74 bp Feature: gene Location: 9446-9829 bp Feature: domain Description: Avd_like Location: 9485-9791 bp Feature: domain Description: Avd_like Location: 9485-9791 bp Feature: gene Location: 10124-11353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10367-10994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103 67-10994 bp Feature: gene Location: 11350-11808 bp Feature: domain Description: MutS_I Location: 11398-11590 bp Feature: domain Description: MutS_I Location: 113 98-11590 bp Feature: gene Location: 11832-12692 bp Feature: domain Description: HTH_18 Location: 12441-12675 bp Feature: domain Description: HTH_18 Location: 12441-12675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: CBVI010000160.1 (1915 bp)
Overview 1 RT 1: 212-1699 bp Neighborhood of RT #1 [212, 1812] RVT-GII GIIM Feature: gene Location: 212-379 bp Feature: gene Location: 544-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 8-14 05 bp Feature: domain Description: GIIM Note: maturase Location: 1495-1699 bp Feature: domain Description: GIIM Note: maturase Location: 14 95-1699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CBVI010000065.1 (2874 bp)
Overview 1 RT 1: 3-2845 bp Neighborhood of RT #1 [3, 2871] group_II_RT_mat RVT-GII GIIM RVT-GII RVT-GII Feature: gene Location: 3-212 bp Feature: gene Location: 311-799 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 317-668 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 317-668 bp Feature: gene Location: 966-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975 -1191 bp Feature: domain Description: GIIM Note: maturase Location: 1269-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1269-15 00 bp Feature: gene Location: 1582-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1786-2197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1786-2197 bp Feature: gene Location: 2424-2579 bp Feature: gene Location: 2728-2871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2731-2845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2731-2845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: CBVI010000112.1 (64583 bp)
Overview 1 RT 1: 57589-62074 bp Neighborhood of RT #1 [57589, 63165] Bac_Flav_CT_G Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII RVT-GII GT4_mannosyltransferase-like Feature: gene Location: 57589-57984 bp Feature: gene Location: 57997-59472 bp Feature: domain Description: Bac_Flav_CT_G Location: 58144-58456 bp Feature: domain Description: Bac_Flav_CT_G Location: 58144-58456 bp Feature: domain Description: Bac_Flav_CT_G Location: 58780-58960 bp Feature: domain Description: Bac_Flav_CT_G Location: 58780-5896 0 bp Feature: domain Description: Bac_Flav_CT_G Location: 59179-59455 bp Feature: domain Description: Bac_Flav_CT_G Location: 59179-59455 bp Feature: gene Location: 59824-60243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60088-60229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 0088-6 0229 bp Feature: gene Location: 60182-60415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60203-60395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 0203-6 0395 bp Feature: gene Location: 60479-60868 bp Feature: gene Location: 60943-63165 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 60952-62074 bp Feature: domain Description: GT4_mannosyltransferase-like Location: 6 0952-6 2074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, GT4_mannosyltransferase-like (cd03822)