myRT

myRT report for GCA_000513375.1_IS5

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Seq: CBWB010000249.1 Escherichia coli IS5 WGS project CBWB000000000 data, contig c39, whole genome shotgun sequence (14295 bp)
Overview 1 RT 1: 9302-13184 bp Neighborhood of RT #1 [9302, 13189] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9302-9760 bp Ori: CDK53185.1 Feature: domain Description: dut Location: 9308-9755 bp Feature: domain Description: dut Location: 9308-9755 bp Feature: gene Location: 9867-10463 bp Ori: CDK53186.1 Feature: domain Description: slmA Location: 9873-10449 bp Feature: domain Description: slmA Location: 9873-1 0449 bp Feature: gene Location: 10509-11468 bp Ori: CDK53187.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10644-11193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0644-1 1 1 93 bp Feature: gene Location: 11766-12407 bp Ori: CDK53188.1 Feature: domain Description: pyrE Location: 11769-12402 bp Feature: domain Description: pyrE Location: 1 1 769-1 2402 bp Feature: gene Location: 12473-13189 bp Ori: CDK53189.1 Feature: domain Description: rph Location: 12476-13184 bp Feature: domain Description: rph Location: 1 2476-1 31 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: CBWB010000128.1 Escherichia coli IS5 WGS project CBWB000000000 data, contig c347, whole genome shotgun sequence (1072 bp)
Overview 1 RT 1: 94-796 bp Neighborhood of RT #1 [94, 1041] RVT-GII GIIM Feature: gene Location: 94-1041 bp Ori: CDK51546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103-52 3 bp Feature: domain Description: GIIM Note: maturase Location: 598-796 bp Feature: domain Description: GIIM Note: maturase Location: 598-796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CBWB010000240.1 Escherichia coli IS5 WGS project CBWB000000000 data, contig c62, whole genome shotgun sequence (38202 bp)
Overview 1 RT 1: 7898-12254 bp Neighborhood of RT #1 [7898, 12254] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 7898-9160 bp Ori: CDK52916.1 Feature: domain Description: YesM Location: 8411-9152 bp Feature: domain Description: YesM Location: 8411-9152 bp Feature: gene Location: 9267-9386 bp Feature: gene Location: 9776-10258 bp Ori: CDK52918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785-10025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785-10025 bp Feature: domain Description: GIIM Note: maturase Location: 10073-10253 bp Feature: domain Description: GIIM Note: maturase Location: 10073 -10253 bp Feature: gene Location: 10325-10864 bp Ori: CDK52919.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10655-10733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10655-1073 3 bp Feature: gene Location: 11350-11991 bp Feature: gene Location: 11988-12254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: CBWB010000375.1 Escherichia coli IS5 WGS project CBWB000000000 data, contig c337, whole genome shotgun sequence (2480 bp)
Overview 1 RT 1: 75-1881 bp Neighborhood of RT #1 [75, 1976] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 75-1976 bp Ori: CDK55082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 2-1173 bp Feature: domain Description: Intron_maturas2 Location: 1287-1545 bp Feature: domain Description: Intron_maturas2 Location: 1287-154 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1719-1881 bp Feature: domain Description: HNHc Note: nucleases Location: 1719-1881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)