myRT

myRT report for GCA_000513455.1_IS1v1

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Seq: CBWA010000343.1 (11043 bp)
Overview 1 RT 1: 2864-6418 bp Neighborhood of RT #1 [2864, 6423] PRK09413 RVT-GII RVT-GII GIIM PinE Feature: gene Location: 2864-3028 bp Feature: gene Location: 3039-3236 bp Feature: domain Description: PRK09413 Location: 3042-3204 bp Feature: domain Description: PRK0941 3 Location: 3042-3204 bp Feature: gene Location: 3712-4125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4033-4120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4033-41 20 bp Feature: gene Location: 4189-5064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4195-4651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 95-4651 bp Feature: domain Description: GIIM Note: maturase Location: 4699-4930 bp Feature: domain Description: GIIM Note: maturase Location: 4699-4930 bp Feature: gene Location: 5275-5676 bp Feature: gene Location: 5776-6423 bp Feature: domain Description: PinE Location: 5869-6418 bp Feature: domain Description: PinE Location: 5869-641 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: CBWA010000138.1 (23471 bp)
Overview 1 RT 1: 12627-18520 bp Neighborhood of RT #1 [12627, 18657] nitrilase RVT-UG5 AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 12627-13097 bp Feature: gene Location: 13444-15135 bp Feature: domain Description: nitrilase Location: 14449-15046 bp Feature: domain Description: nitrilase Location: 14449-15046 bp Feature: gene Location: 15132-16652 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15660-16149 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15660-16149 bp Feature: gene Location: 16947-17750 bp Feature: domain Description: AbiEi_3_N Location: 16980-17241 bp Feature: domain Description: AbiEi_3_N Location: 16980-172 41 bp Feature: domain Description: AbiEi_3 Location: 17253-17709 bp Feature: domain Description: AbiEi_3 Location: 172 53-17709 bp Feature: gene Location: 17737-18657 bp Feature: domain Description: AbiEii Location: 17779-18520 bp Feature: domain Description: AbiEii Location: 17779-1852 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nitrilase (cl11424), RVT-UG5, AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: CBWA010000423.1 (15443 bp)
Overview 1 RT 1: 11839-15233 bp Neighborhood of RT #1 [11839, 15235] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11839-12165 bp Feature: domain Description: InsE Location: 11842-12163 bp Feature: domain Description: InsE Location: 11842-12163 bp Feature: gene Location: 12165-12644 bp Feature: domain Description: PHA02517 Location: 12225-12579 bp Feature: domain Description: PHA02517 Location: 12225-12579 bp Feature: gene Location: 13236-14759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13509-14241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 509-14241 bp Feature: domain Description: GIIM Note: maturase Location: 14316-14514 bp Feature: domain Description: GIIM Note: maturase Location: 143 16-14514 bp Feature: gene Location: 14936-15235 bp Feature: domain Description: PHA02517 Location: 14939-15233 bp Feature: domain Description: PHA02517 Location: 1493 9-1523 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)