myRT

myRT report for GCA_000515075.1_ASM51507v1

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Seq: AZXD01000107.1 (2369 bp)
Overview 1 RT 1: 126-1761 bp Neighborhood of RT #1 [126, 1910] GIIM RVT_N RVT-GII Feature: gene Location: 126-716 bp Feature: domain Description: GIIM Note: maturase Location: 132-243 bp Feature: domain Description: GIIM Note: maturase Location: 1 32-243 bp Feature: gene Location: 735-1910 bp Feature: domain Description: RVT_N Location: 807-1044 bp Feature: domain Description: RVT_N Location: 807-1 044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 04-1 761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT_N (pfam13655), RVT-GII

Seq: AZXD01000103.1 (2893 bp)
Overview 1 RT 1: 1-2795 bp Neighborhood of RT #1 [1, 2863] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 DDE_5 RVT-GII Feature: gene Location: 1-843 bp Feature: domain Description: zf-ISL3 Location: 115-247 bp Feature: domain Description: zf-ISL3 Location: 115-2 47 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 289-430 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2 89-430 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 556-832 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 556-832 bp Feature: gene Location: 980-1570 bp Feature: domain Description: DDE_5 Location: 989-1271 bp Feature: domain Description: DDE_5 Location: 989-12 71 bp Feature: gene Location: 2156-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2417-2795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 417-2 795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), DDE_5 (pfam13546), RVT-GII

Seq: AZXD01000033.1 (48530 bp)
Overview 1 RT 1: 44662-48378 bp Neighborhood of RT #1 [44662, 48398] DUF397 DDE_Tnp_1_assoc DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 44662-44862 bp Feature: domain Description: DUF397 Location: 44686-44842 bp Feature: domain Description: DUF3 97 Location: 44686-44842 bp Feature: gene Location: 45128-46282 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 45185-45455 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 45185-45455 bp Feature: domain Description: DDE_Tnp_1 Location: 45581-46106 bp Feature: domain Description: DDE_Tnp_1 Location: 45581-46106 bp Feature: gene Location: 46644-48398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46905-47700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46905-47700 bp Feature: domain Description: Intron_maturas2 Location: 47802-48033 bp Feature: domain Description: Intron_maturas2 Location: 47802-4803 3 bp Feature: domain Description: HNHc Note: nucleases Location: 48225-48378 bp Feature: domain Description: HNHc Note: nucleases Location: 48225-483 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF397 (pfam04149), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AZXD01000036.1 (47413 bp)
Overview 1 RT 1: 40567-47261 bp Neighborhood of RT #1 [40567, 47281] PRK12316 PRK12316 PRK12316 PRK12316 DDE_Tnp_1_assoc DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 40567-43548 bp Feature: domain Description: PRK12316 Location: 40579-41965 bp Feature: domain Description: PRK12316 Location: 4 0579-4 1965 bp Feature: domain Description: PRK12316 Location: 42049-42829 bp Feature: domain Description: PRK12316 Location: 4 204 9-4 2829 bp Feature: domain Description: PRK12316 Location: 42835-43258 bp Feature: domain Description: PRK12316 Location: 4 2835-4 3258 bp Feature: domain Description: PRK12316 Location: 43315-43519 bp Feature: domain Description: PRK12316 Location: 4 3315-4 3519 bp Feature: gene Location: 44020-45165 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 44107-44368 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4 4 107-4 4 368 bp Feature: domain Description: DDE_Tnp_1 Location: 44401-44989 bp Feature: domain Description: DDE_Tnp_1 Location: 4 4 4 01-4 4 989 bp Feature: gene Location: 45527-47281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45788-46583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5788-4 6583 bp Feature: domain Description: Intron_maturas2 Location: 46685-46916 bp Feature: domain Description: Intron_maturas2 Location: 4 6685-4 6916 bp Feature: domain Description: HNHc Note: nucleases Location: 47108-47261 bp Feature: domain Description: HNHc Note: nucleases Location: 4 7108-4 7261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12316 (peptide synthase; Provisional), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AZXD01000132.1 (1102 bp)
Overview 1 RT 1: 1-964 bp Neighborhood of RT #1 [1, 1101] RVT-GII GIIM Feature: gene Location: 1-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-679 bp Feature: domain Description: GIIM Note: maturase Location: 748-964 bp Feature: domain Description: GIIM Note: maturase Location: 748-964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AZXD01000077.1 (12404 bp)
Overview 1 RT 1: 76-3032 bp Neighborhood of RT #1 [76, 3064] RVT-GII Intron_maturas2 HNHc GAF_2 ANTAR Feature: gene Location: 76-273 bp Feature: gene Location: 534-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795-1590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795-1590 bp Feature: domain Description: Intron_maturas2 Location: 1692-1923 bp Feature: domain Description: Intron_maturas2 Location: 16 92-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 2115-2268 bp Feature: domain Description: HNHc Note: nucleases Location: 2115-226 8 bp Feature: gene Location: 2491-2640 bp Feature: gene Location: 2648-3064 bp Feature: domain Description: GAF_2 Location: 2669-2831 bp Feature: domain Description: GAF_2 Location: 26 6 9-2831 bp Feature: domain Description: ANTAR Location: 2876-3032 bp Feature: domain Description: ANTAR Location: 2876 -3032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GAF_2 (pfam13185), ANTAR (smart01012)

Seq: AZXD01000071.1 (15608 bp)
Overview 1 RT 1: 3-3618 bp 2 RT 2: 10975-13279 bp Neighborhood of RT #1 [3, 3680] HTH_Tnp_4 RVT-GII Intron_maturas2 HNHc PDC1 Neighborhood of RT #2 [10975, 13311] GIIM RVT-GII ABC_MJ0796_LolCDE_FtsE Feature: gene Location: 3-233 bp Feature: domain Description: HTH_Tnp_4 Location: 153-231 bp Feature: domain Description: HTH_Tnp_4 Location: 153-231 bp Feature: gene Location: 293-1315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-593 bp Feature: domain Description: Intron_maturas2 Location: 695-929 bp Feature: domain Description: Intron_maturas2 Location: 695-929 bp Feature: domain Description: HNHc Note: nucleases Location: 1106-1274 bp Feature: domain Description: HNHc Note: nucleases Location: 1106-127 4 bp Feature: gene Location: 1431-1643 bp Feature: gene Location: 2049-3680 bp Feature: domain Description: PDC1 Location: 2052-3618 bp Feature: domain Description: PDC1 Location: 2052-3618 bp Feature: gene Location: 10975-11355 bp Feature: gene Location: 11520-11810 bp Feature: domain Description: GIIM Note: maturase Location: 11523-11682 bp Feature: domain Description: GIIM Note: maturase Location: 11523-11682 bp Feature: gene Location: 11865-12152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11886-12069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11886-12069 bp Feature: gene Location: 12210-12365 bp Feature: gene Location: 12730-13311 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 12733-13279 bp Feature: domain Description: ABC_MJ07 96_LolCDE_FtsE Location: 127 33-1327 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PDC1 (COG3961), GIIM (pfam08388), ABC_MJ0796_LolCDE_FtsE (cd03255)