myRT

myRT report for GCA_000515175.1_ASM51517v1

Download annotations/find similar RTs

Seq: AZXI01000113.1 (1869 bp)
Overview 1 RT 1: 119-1826 bp Neighborhood of RT #1 [119, 1867] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 119-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1 1 45 bp Feature: domain Description: Intron_maturas2 Location: 1247-1478 bp Feature: domain Description: Intron_maturas2 Location: 1 247-1 478 bp Feature: domain Description: HNHc Note: nucleases Location: 1661-1826 bp Feature: domain Description: HNHc Note: nucleases Location: 1 661 -1 826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AZXI01000049.1 (34726 bp)
Overview 1 RT 1: 2-4134 bp Neighborhood of RT #1 [2, 4271] DDE_Tnp_1_assoc RVT_N RVT-GII KOG4768 COG3547 Feature: gene Location: 2-427 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 41-299 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 41-2 99 bp Feature: gene Location: 1016-1915 bp Feature: domain Description: RVT_N Location: 1106-1322 bp Feature: domain Description: RVT_N Location: 1106-132 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-1763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-1763 bp Feature: gene Location: 2033-2812 bp Feature: domain Description: KOG4768 Location: 2039-2789 bp Feature: domain Description: KOG4768 Location: 2 039-2 789 bp Feature: gene Location: 2991-4271 bp Feature: domain Description: COG3547 Location: 3141-4134 bp Feature: domain Description: COG3547 Location: 3141-4134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT_N (pfam13655), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), COG3547 (Transposase )

Seq: AZXI01000087.1 (7082 bp)
Overview 1 RT 1: 1-5334 bp Neighborhood of RT #1 [1, 5351] RVT-GII RVT-GII GIIM RVT-GII PHA02517 Feature: gene Location: 1-147 bp Feature: gene Location: 770-1090 bp Feature: gene Location: 1580-2059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814-1907 bp Feature: gene Location: 2826-3956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2844-3528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2844-3 528 bp Feature: domain Description: GIIM Note: maturase Location: 3606-3831 bp Feature: domain Description: GIIM Note: maturase Location: 3 606-3 83 1 bp Feature: gene Location: 4170-4445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4176-4410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4176-4410 bp Feature: gene Location: 4532-4678 bp Feature: gene Location: 4866-5351 bp Feature: domain Description: PHA02517 Location: 4869-5334 bp Feature: domain Description: PHA02517 Location: 4869-53 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AZXI01000102.1 (2969 bp)
Overview 1 RT 1: 143-2381 bp Neighborhood of RT #1 [143, 2521] RVT-GII GIIM Feature: gene Location: 143-946 bp Feature: gene Location: 1055-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394-2090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394 -2090 bp Feature: domain Description: GIIM Note: maturase Location: 2162-2381 bp Feature: domain Description: GIIM Note: maturase Location: 2162-2381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AZXI01000076.1 (9187 bp)
Overview 1 RT 1: 2-2885 bp Neighborhood of RT #1 [2, 4651] RVT-GII MFS_MMR_MDR_like DUF4365 Feature: gene Location: 2-181 bp Feature: gene Location: 340-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-5 77 bp Feature: gene Location: 1047-2633 bp Feature: domain Description: MFS_MMR_MDR_like Location: 1110-2535 bp Feature: domain Description: MFS_MMR_MDR_like Location: 1110-25 35 bp Feature: gene Location: 2630-4651 bp Feature: domain Description: DUF4365 Location: 2636-2885 bp Feature: domain Description: DUF4365 Location: 2636-2885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS_MMR_MDR_like (cd17504), DUF4365 (pfam14280)

Seq: AZXI01000063.1 (19105 bp)
Overview 1 RT 1: 1-5577 bp Neighborhood of RT #1 [1, 5624] rve_3 DDE_Tnp_1_2 RVT-GII GIIM PRK02186 MFS_MdtH_MDR_like Feature: gene Location: 1-342 bp Feature: domain Description: rve_3 Location: 37-232 bp Feature: domain Description: rve_3 Location: 37-232 bp Feature: gene Location: 507-1007 bp Feature: domain Description: DDE_Tnp_1_2 Location: 720-1005 bp Feature: domain Description: DDE_Tnp_1_2 Location: 720-1005 bp Feature: gene Location: 1358-2620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673-2303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 73-2303 bp Feature: domain Description: GIIM Note: maturase Location: 2384-2594 bp Feature: domain Description: GIIM Note: maturase Location: 2384-2594 bp Feature: gene Location: 3190-4428 bp Feature: domain Description: PRK02186 Location: 3208-4384 bp Feature: domain Description: PRK02186 Location: 3208-4384 bp Feature: gene Location: 4431-5624 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 4446-5577 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 4446 -5577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), DDE_Tnp_1_2 (pfam13586), RVT-GII, GIIM (pfam08388), PRK02186 (argininosuccinate lyase; Provisional), MFS_MdtH_MDR_like (cd17329)

Seq: AZXI01000062.1 (20567 bp)
Overview 1 RT 1: 6333-13609 bp Neighborhood of RT #1 [6333, 13776] DUF2220 GIIM RVT-GII COG5635 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 6333-7331 bp Feature: domain Description: DUF2220 Location: 6714-6990 bp Feature: domain Description: DUF2220 Location: 67 14-6990 bp Feature: gene Location: 7480-7773 bp Feature: domain Description: GIIM Note: maturase Location: 7486-7708 bp Feature: domain Description: GIIM Note: maturase Location: 7 486-7 7 08 bp Feature: gene Location: 8090-8725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8306-8723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8306-87 23 bp Feature: gene Location: 9537-9731 bp Feature: gene Location: 9859-13776 bp Feature: domain Description: COG5635 Location: 10687-11899 bp Feature: domain Description: COG5635 Location: 10687 -11899 bp Feature: domain Description: HEAT_2 Location: 12289-12469 bp Feature: domain Description: HEAT_2 Location: 12289-12469 bp Feature: domain Description: HEAT_2 Location: 12505-12778 bp Feature: domain Description: HEAT_2 Location: 12505-127 7 8 bp Feature: domain Description: HEAT_2 Location: 12811-13051 bp Feature: domain Description: HEAT_2 Location: 12811-13051 bp Feature: domain Description: HEAT_2 Location: 13126-13399 bp Feature: domain Description: HEAT_2 Location: 13126-13399 bp Feature: domain Description: HEAT_2 Location: 13432-13609 bp Feature: domain Description: HEAT_2 Location: 13432-13609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2220 (pfam09983), GIIM (pfam08388), RVT-GII, COG5635 (Predicted NTPase, NACHT family domain ), HEAT_2 (pfam13646)