myRT

myRT report for GCA_000515215.1_ASM51521v1

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Seq: KI911557.1 (5412720 bp)
Overview 1 RT 1: 645675-650306 bp 2 RT 2: 1854630-1857047 bp 3 RT 3: 2132382-2136719 bp 4 RT 4: 2224048-2229997 bp 5 RT 5: 3099760-3105117 bp 6 RT 6: 3738821-3743921 bp 7 RT 7: 4294722-4297482 bp 8 RT 8: 5008749-5014854 bp 9 RT 9: 5083313-5089332 bp Neighborhood of RT #1 [645675, 650359] SLATT_5 RVT-UG17 ACAD Neighborhood of RT #2 [1854630, 1857047] RVT-GII Neighborhood of RT #3 [2132382, 2136724] y4iL_like DUF2835 RVT-GII GIIM PRK05457 Neighborhood of RT #4 [2224048, 2229997] MhpC SLR SMC_prok_B Peptidase_C14 RVT-GII GIIM Neighborhood of RT #5 [3099760, 3105117] DnaJ TPR TPR RVT-GII GIIM Neighborhood of RT #6 [3738821, 3743938] RVT-GII GIIM AguA CPA Neighborhood of RT #7 [4294722, 4297541] RVT-GII GIIM COG1848 Neighborhood of RT #8 [5008749, 5014895] RVT-GII GIIM DUF3999 DUF3999 DUF2339 Neighborhood of RT #9 [5083313, 5089451] Collagen RVT-GII GIIM vWA_ywmD_type OmpA SLR Feature: gene Location: 645675-646226 bp Feature: gene Location: 646768-647361 bp Feature: domain Description: SLATT_5 Location: 646783-647344 bp Feature: domain Description: SLATT_5 Location: 646783-647344 bp Feature: gene Location: 647363-648694 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 647591-648194 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 647591 -6481 94 bp Feature: gene Location: 648809-649159 bp Feature: gene Location: 649241-650359 bp Feature: domain Description: ACAD Location: 649310-650306 bp Feature: domain Description: ACAD Location: 64931 0-650306 bp Feature: gene Location: 1854630-1854869 bp Feature: gene Location: 1854881-1855120 bp Feature: gene Location: 1855395-1856186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1855443-1856100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 855443-1 8561 00 bp Feature: gene Location: 1856560-1856703 bp Feature: gene Location: 1856799-1857047 bp Feature: gene Location: 2132382-2133392 bp Feature: domain Description: y4iL_like Location: 2132499-2133348 bp Feature: domain Description: y4iL_like Location: 21 32499-21 33348 bp Feature: gene Location: 2133590-2133760 bp Feature: domain Description: DUF2835 Location: 2133593-2133755 bp Feature: domain Description: DUF2835 Location: 21 33593-21 33755 bp Feature: gene Location: 2133959-2135212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2134208-2134871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 34208-21 34871 bp Feature: domain Description: GIIM Note: maturase Location: 2134940-2135153 bp Feature: domain Description: GIIM Note: maturase Location: 21 34940-21 351 53 bp Feature: gene Location: 2135450-2135767 bp Feature: gene Location: 2135849-2136724 bp Feature: domain Description: PRK05457 Location: 2135852-2136719 bp Feature: domain Description: PRK05457 Location: 21 35852-21 3671 9 bp Feature: gene Location: 2224048-2224860 bp Feature: domain Description: MhpC Location: 2224423-2224825 bp Feature: domain Description: MhpC Location: 2224423-2224825 bp Feature: gene Location: 2224929-2227190 bp Feature: domain Description: SLR Location: 2225208-2225478 bp Feature: domain Description: SLR Location: 2225208-2225478 bp Feature: domain Description: SMC_prok_B Location: 2225508-2226081 bp Feature: domain Description: SMC_prok_B Location: 2225508-2226081 bp Feature: domain Description: Peptidase_C14 Location: 2226468-2227131 bp Feature: domain Description: Peptidase_C1 4 Location: 2226468-22271 31 bp Feature: gene Location: 2227464-2228753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227713-2228376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222771 3-2228376 bp Feature: domain Description: GIIM Note: maturase Location: 2228448-2228655 bp Feature: domain Description: GIIM Note: maturase Location: 2228448-2228655 bp Feature: gene Location: 2228991-2229350 bp Feature: gene Location: 2229494-2229997 bp Feature: gene Location: 3099760-3100095 bp Feature: domain Description: DnaJ Location: 3099772-3099916 bp Feature: domain Description: DnaJ Location: 3099772-309991 6 bp Feature: gene Location: 3100102-3102591 bp Feature: domain Description: TPR Location: 3100165-3100354 bp Feature: domain Description: TPR Location: 31 001 65-31 00354 bp Feature: domain Description: TPR Location: 3101245-3101476 bp Feature: domain Description: TPR Location: 31 01 245-31 01 476 bp Feature: gene Location: 3102973-3104262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3103222-3103885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 03222-31 03885 bp Feature: domain Description: GIIM Note: maturase Location: 3103954-3104164 bp Feature: domain Description: GIIM Note: maturase Location: 31 03954-31 041 64 bp Feature: gene Location: 3104500-3104862 bp Feature: gene Location: 3104914-3105117 bp Feature: gene Location: 3738821-3739045 bp Feature: gene Location: 3739338-3739628 bp Feature: gene Location: 3739708-3740997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3739957-3740620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3739957-3740620 bp Feature: domain Description: GIIM Note: maturase Location: 3740689-3740902 bp Feature: domain Description: GIIM Note: maturase Location: 3740689-3740902 bp Feature: gene Location: 3741949-3742980 bp Feature: domain Description: AguA Location: 3741952-3742960 bp Feature: domain Description: AguA Location: 3741 952-3742960 bp Feature: gene Location: 3743054-3743938 bp Feature: domain Description: CPA Location: 3743078-3743921 bp Feature: domain Description: CPA Location: 3743078-3743921 bp Feature: gene Location: 4294722-4294856 bp Feature: gene Location: 4294970-4295260 bp Feature: gene Location: 4295340-4296629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4295589-4296252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4295589-4296252 bp Feature: domain Description: GIIM Note: maturase Location: 4296321-4296534 bp Feature: domain Description: GIIM Note: maturase Location: 4296321 -4296534 bp Feature: gene Location: 4296826-4297125 bp Feature: gene Location: 4297128-4297541 bp Feature: domain Description: COG1848 Location: 4297134-4297482 bp Feature: domain Description: COG1 848 Location: 42971 34-4297482 bp Feature: gene Location: 5008749-5008985 bp Feature: gene Location: 5009066-5009356 bp Feature: gene Location: 5009436-5010725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009685-5010348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009685-501 0348 bp Feature: domain Description: GIIM Note: maturase Location: 5010417-5010630 bp Feature: domain Description: GIIM Note: maturase Location: 501 041 7-501 0630 bp Feature: gene Location: 5010997-5012385 bp Feature: domain Description: DUF3999 Location: 5011108-5011258 bp Feature: domain Description: DUF3999 Location: 501 1 1 08-501 1 258 bp Feature: domain Description: DUF3999 Location: 5011333-5012185 bp Feature: domain Description: DUF3999 Location: 501 1 333-501 21 85 bp Feature: gene Location: 5012382-5014895 bp Feature: domain Description: DUF2339 Location: 5012883-5014854 bp Feature: domain Description: DUF2339 Location: 501 2883-501 4854 bp Feature: gene Location: 5083313-5084884 bp Feature: domain Description: Collagen Location: 5084009-5084135 bp Feature: domain Description: Collagen Location: 5084009-50841 35 bp Feature: gene Location: 5084997-5085440 bp Feature: gene Location: 5085659-5086912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5085908-5086571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5085908-5086571 bp Feature: domain Description: GIIM Note: maturase Location: 5086640-5086853 bp Feature: domain Description: GIIM Note: maturase Location: 5086640-5086853 bp Feature: gene Location: 5087655-5088839 bp Feature: domain Description: vWA_ywmD_type Location: 5087793-5088315 bp Feature: domain Description: vWA_ywmD_type Location: 5087793-508831 5 bp Feature: domain Description: OmpA Location: 5088516-5088828 bp Feature: domain Description: OmpA Location: 508851 6-5088828 bp Feature: gene Location: 5089008-5089451 bp Feature: domain Description: SLR Location: 5089074-5089332 bp Feature: domain Description: SLR Location: 5089074-5089332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, ACAD (cl09933), RVT-GII, y4iL_like (cd08152), DUF2835 (pfam11197), GIIM (pfam08388), PRK05457 (protease HtpX), MhpC (COG0596), SLR (sd00010)
SMC_prok_B (TIGR02168), Peptidase_C14 (pfam00656), DnaJ (smart00271), TPR (smart00028), AguA (COG2957), CPA (cd07573), COG1848 (Predicted nucleic acid-binding protein, contains PIN domain ), DUF3999 (pfam13163), DUF2339 (pfam10101), Collagen (pfam01391)
vWA_ywmD_type (cd01456), OmpA (pfam00691)