myRT

myRT report for GCA_000517045.1_ASM51704v1

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Seq: KI912098.1 (394634 bp)
Overview 1 RT 1: 1637-3545 bp 2 RT 2: 26663-29814 bp 3 RT 3: 75197-79511 bp 4 RT 4: 202630-207912 bp 5 RT 5: 360503-363454 bp Neighborhood of RT #1 [1637, 3550] rve_3 RVT-GII DDE_Tnp_1_5 Neighborhood of RT #2 [26663, 29814] DDE_Tnp_1 RVT-GII GIIM COG3415 Neighborhood of RT #3 [75197, 79511] Transposase_mut RVT-GII GIIM Transposase_mut Neighborhood of RT #4 [202630, 207941] BadF fabG RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #5 [360503, 363531] PHA02517 RVT-GII RVT-GII GIIM PHA02517 Feature: gene Location: 1637-1975 bp Feature: domain Description: rve_3 Location: 1721-1892 bp Feature: domain Description: rve_3 Location: 1 721 -1 892 bp Feature: gene Location: 1811-2227 bp Feature: gene Location: 2367-2774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388-2526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388-2526 bp Feature: gene Location: 2783-3010 bp Feature: gene Location: 3239-3550 bp Feature: domain Description: DDE_Tnp_1_5 Location: 3305-3545 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 3305-3545 bp Feature: gene Location: 26663-26806 bp Feature: gene Location: 26974-27441 bp Feature: domain Description: DDE_Tnp_1 Location: 26983-27382 bp Feature: domain Description: DDE_Tnp_1 Location: 26983-27382 bp Feature: gene Location: 27686-28255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27698-27803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27698-27803 bp Feature: domain Description: GIIM Note: maturase Location: 27872-28142 bp Feature: domain Description: GIIM Note: maturase Location: 27872-281 42 bp Feature: gene Location: 28771-29154 bp Feature: domain Description: COG3415 Location: 28774-29137 bp Feature: domain Description: COG341 5 Location: 28774-291 37 bp Feature: gene Location: 29365-29814 bp Feature: gene Location: 75197-75385 bp Feature: gene Location: 75506-76030 bp Feature: domain Description: Transposase_mut Location: 75518-75995 bp Feature: domain Description: Transposase_mut Location: 7551 8-75995 bp Feature: gene Location: 76602-78107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76905-77655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76905-77655 bp Feature: domain Description: GIIM Note: maturase Location: 77724-77994 bp Feature: domain Description: GIIM Note: maturase Location: 77724-77994 bp Feature: gene Location: 78443-79081 bp Feature: domain Description: Transposase_mut Location: 78485-78818 bp Feature: domain Description: Transposase_mut Location: 78485-7881 8 bp Feature: gene Location: 79260-79511 bp Feature: gene Location: 202630-203061 bp Feature: domain Description: BadF Location: 202792-203017 bp Feature: domain Description: BadF Location: 202792-20301 7 bp Feature: gene Location: 203119-203571 bp Feature: domain Description: fabG Location: 203140-203563 bp Feature: domain Description: fabG Location: 2031 40-203563 bp Feature: gene Location: 203613-205436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204351-205041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204351 -205041 bp Feature: gene Location: 205950-206303 bp Feature: domain Description: TnpB_IS66 Location: 205977-206265 bp Feature: domain Description: TnpB_IS66 Location: 205977-206265 bp Feature: gene Location: 206355-207941 bp Feature: domain Description: LZ_Tnp_IS66 Location: 206472-206697 bp Feature: domain Description: LZ_Tnp_IS66 Location: 206472-206697 bp Feature: domain Description: zf-IS66 Location: 206724-206850 bp Feature: domain Description: zf-IS66 Location: 206724-206850 bp Feature: domain Description: DDE_Tnp_IS66 Location: 206913-207780 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20691 3-207780 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 207801-207912 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 207801 -20791 2 bp Feature: gene Location: 360503-360640 bp Feature: domain Description: PHA02517 Location: 360515-360608 bp Feature: domain Description: PHA0251 7 Location: 36051 5-360608 bp Feature: gene Location: 360881-361090 bp Feature: gene Location: 361259-362116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361532-362000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 532-362000 bp Feature: gene Location: 362127-362537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362133-362271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3621 33-362271 bp Feature: domain Description: GIIM Note: maturase Location: 362343-362463 bp Feature: domain Description: GIIM Note: maturase Location: 362343-362463 bp Feature: gene Location: 362690-362869 bp Feature: gene Location: 362866-363531 bp Feature: domain Description: PHA02517 Location: 362965-363454 bp Feature: domain Description: PHA0251 7 Location: 362965-363454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, DDE_Tnp_1_5 (pfam13737), DDE_Tnp_1 (pfam01609), GIIM (pfam08388), COG3415 (Transposase ), Transposase_mut (pfam00872), BadF (COG2971), fabG (PRK12825), TnpB_IS66 (pfam05717)
LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)