myRT

myRT report for GCA_000517065.1_ASM51706v1

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Seq: KI912105.1 (4108720 bp)
Overview 1 RT 1: 490671-494158 bp 2 RT 2: 496681-502646 bp 3 RT 3: 513454-518563 bp 4 RT 4: 521148-525040 bp 5 RT 5: 982904-986371 bp 6 RT 6: 3667566-3673261 bp Neighborhood of RT #1 [490671, 494158] HTH_Tnp_1 RVT-GII Neighborhood of RT #2 [496681, 502646] PLDc_Nuc_like PLDc_Nuc_like Rhs_assc_core TNT RVT-GII GIIM Neighborhood of RT #3 [513454, 518563] AAA_15 TOPRIM_OLD RVT-GII GIIM Neighborhood of RT #4 [521148, 525066] INT_IntI_C RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Gp49 Neighborhood of RT #5 [982904, 986371] IstB_IS21 RVT-GII Neighborhood of RT #6 [3667566, 3673278] HTH_Tnp_1 RVT-GII GIIM COG2865 Feature: gene Location: 490671-490811 bp Feature: gene Location: 491304-491615 bp Feature: domain Description: HTH_Tnp_1 Location: 491343-491475 bp Feature: domain Description: HTH_Tnp_1 Location: 491 343-491 475 bp Feature: gene Location: 491663-492583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491876-492545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 876-492545 bp Feature: gene Location: 492947-493120 bp Feature: gene Location: 493379-494158 bp Feature: gene Location: 496681-500493 bp Feature: domain Description: PLDc_Nuc_like Location: 497080-497455 bp Feature: domain Description: PLDc_Nuc_like Location: 497080-497455 bp Feature: domain Description: PLDc_Nuc_like Location: 497632-498145 bp Feature: domain Description: PLDc_Nuc_like Location: 497632-4981 45 bp Feature: domain Description: Rhs_assc_core Location: 499915-500146 bp Feature: domain Description: Rhs_assc_core Location: 49991 5-5001 46 bp Feature: domain Description: TNT Location: 500233-500485 bp Feature: domain Description: TNT Location: 500233-500485 bp Feature: gene Location: 500506-500748 bp Feature: gene Location: 500846-502108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501059-501728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 059-501 728 bp Feature: domain Description: GIIM Note: maturase Location: 501809-502019 bp Feature: domain Description: GIIM Note: maturase Location: 501 809-50201 9 bp Feature: gene Location: 502205-502402 bp Feature: gene Location: 502473-502646 bp Feature: gene Location: 513454-514257 bp Feature: gene Location: 514324-516240 bp Feature: domain Description: AAA_15 Location: 514327-515515 bp Feature: domain Description: AAA_1 5 Location: 51 4327-51 551 5 bp Feature: domain Description: TOPRIM_OLD Location: 515659-515911 bp Feature: domain Description: TOPRIM_OLD Location: 51 5659-51 591 1 bp Feature: gene Location: 516333-517595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516546-517215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 6546-51 721 5 bp Feature: domain Description: GIIM Note: maturase Location: 517296-517506 bp Feature: domain Description: GIIM Note: maturase Location: 51 7296-51 7506 bp Feature: gene Location: 517959-518132 bp Feature: gene Location: 518249-518563 bp Feature: gene Location: 521148-522029 bp Feature: gene Location: 522032-522514 bp Feature: gene Location: 522748-523713 bp Feature: domain Description: INT_IntI_C Location: 522754-522826 bp Feature: domain Description: INT_IntI_C Location: 522754-522826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522937-523333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522937-523333 bp Feature: domain Description: GIIM Note: maturase Location: 523414-523624 bp Feature: domain Description: GIIM Note: maturase Location: 52341 4-523624 bp Feature: gene Location: 523710-524426 bp Feature: domain Description: Phage_int_SAM_4 Location: 523797-524007 bp Feature: domain Description: Phage_int_SAM_4 Location: 523797-524007 bp Feature: domain Description: INT_IntI_C Location: 524061-524352 bp Feature: domain Description: INT_IntI_C Location: 524061 -524352 bp Feature: gene Location: 524722-525066 bp Feature: domain Description: Gp49 Location: 524770-525040 bp Feature: domain Description: Gp49 Location: 524770-525040 bp Feature: gene Location: 982904-983077 bp Feature: gene Location: 983336-983470 bp Feature: domain Description: IstB_IS21 Location: 983342-983435 bp Feature: domain Description: IstB_IS21 Location: 983342-983435 bp Feature: gene Location: 983504-983896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983717-983837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98371 7-983837 bp Feature: gene Location: 984260-984433 bp Feature: gene Location: 984701-986371 bp Feature: gene Location: 3667566-3667832 bp Feature: domain Description: HTH_Tnp_1 Location: 3667572-3667773 bp Feature: domain Description: HTH_Tnp_1 Location: 3667572-3667773 bp Feature: gene Location: 3667968-3670112 bp Feature: gene Location: 3670321-3671370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670459-3670990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670459-3670990 bp Feature: domain Description: GIIM Note: maturase Location: 3671071-3671281 bp Feature: domain Description: GIIM Note: maturase Location: 3671 071 -3671 281 bp Feature: gene Location: 3671476-3671649 bp Feature: gene Location: 3671959-3673278 bp Feature: domain Description: COG2865 Location: 3671968-3673261 bp Feature: domain Description: COG2865 Location: 3671 968-3673261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, PLDc_Nuc_like (cd09116), Rhs_assc_core (TIGR03696), TNT (pfam14021), GIIM (pfam08388), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), INT_IntI_C (cd01193), Phage_int_SAM_4 (pfam13495)
Gp49 (pfam05973), IstB_IS21 (pfam01695), COG2865 (Predicted transcriptional regulator, contains HTH domain )