myRT

myRT report for GCA_000517085.1_ASM51708v1

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Seq: KI912107.1 (5926711 bp)
Overview 1 RT 1: 431759-434360 bp 2 RT 2: 612087-618657 bp 3 RT 3: 1817344-1830632 bp 4 RT 4: 2235533-2242188 bp 5 RT 5: 2278121-2285426 bp 6 RT 6: 3253361-3271908 bp 7 RT 7: 3277773-3290616 bp 8 RT 8: 3317514-3322002 bp 9 RT 9: 3326564-3330711 bp 10 RT 10: 3876226-3880642 bp 11 RT 11: 4001440-4005880 bp 12 RT 12: 4617812-4622472 bp 13 RT 13: 4625157-4629135 bp 14 RT 14: 4639893-4644756 bp 15 RT 15: 5731112-5740942 bp Neighborhood of RT #1 [431759, 434386] RVT-GII couple_hipB couple_hipA Neighborhood of RT #2 [612087, 618668] DUF1735 PKD PKD RVT-GII RVT-GII Glyco_hydro_3 PRK15098 Neighborhood of RT #3 [1817344, 1830757] RVT-GII GIIM RVT-GII GIIM TssD DUF3289 Neighborhood of RT #4 [2235533, 2242217] DEDDh PRK14975 RVT-UG9 ComA-like_MBL-fold RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like Neighborhood of RT #5 [2278121, 2285437] COG3547 Aes MhpC RVT-GII GIIM thyA RVT-GII GIIM RVT-GII Neighborhood of RT #6 [3253361, 3272498] group_II_RT_mat RVT-GII RVT-UG8 RVT-UG3 DEXHc_Ski2 BRR2 IstB_IS21 RVT-GII GIIM RVT-GII RVT-GII GIIM STKc_PknB_like Neighborhood of RT #7 [3277773, 3290693] HTH_XRE Gp49 RVT-GII GIIM PHA02517 DDE_Tnp_1 CSP_CDS RVT-GII GIIM Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #8 [3317514, 3322202] HigA HigB RVT-GII GIIM RVT-GII RloB AAA_21 Neighborhood of RT #9 [3326564, 3330711] RVT-GII GIIM TPR Neighborhood of RT #10 [3876226, 3880642] AAA_15 AAA_15 RVT-GII Neighborhood of RT #11 [4001440, 4005894] CTP_transf_1 RVT-GII KOG0731 RsfS Neighborhood of RT #12 [4617812, 4622472] DDE_Tnp_ISL3 RVT-GII TlpA_like_family Neighborhood of RT #13 [4625157, 4629135] AraC SbmC RVT-GII group_II_RT_mat Neighborhood of RT #14 [4639893, 4644756] PRK09183 COG4584 COG4584 RVT-GII GIIM COG1373 Neighborhood of RT #15 [5731112, 5740942] group_II_RT_mat DDE_5 RVT-UG17 RVT-GII GIIM rfc Feature: gene Location: 431759-431983 bp Feature: gene Location: 432192-432638 bp Feature: gene Location: 432687-433031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432693-432846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432693-432846 bp Feature: gene Location: 433846-434058 bp Feature: domain Description: couple_hipB Location: 433855-434023 bp Feature: domain Description: couple_hipB Location: 433855-434023 bp Feature: gene Location: 434051-434386 bp Feature: domain Description: couple_hipA Location: 434066-434360 bp Feature: domain Description: couple_hipA Location: 434066-434360 bp Feature: gene Location: 612087-612992 bp Feature: domain Description: DUF1735 Location: 612171-612537 bp Feature: domain Description: DUF1 735 Location: 61 21 71 -61 2537 bp Feature: gene Location: 613097-614611 bp Feature: domain Description: PKD Location: 613322-613469 bp Feature: domain Description: PKD Location: 61 3322-61 3469 bp Feature: domain Description: PKD Location: 613604-613736 bp Feature: domain Description: PKD Location: 61 3604-61 3736 bp Feature: gene Location: 614865-615056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614868-615045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 4868-61 5045 bp Feature: gene Location: 615061-615279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615064-615271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 5064-61 5271 bp Feature: gene Location: 615443-616075 bp Feature: domain Description: Glyco_hydro_3 Location: 615653-616034 bp Feature: domain Description: Glyco_hydro_3 Location: 61 5653-61 6034 bp Feature: gene Location: 616221-618668 bp Feature: domain Description: PRK15098 Location: 616398-618657 bp Feature: domain Description: PRK1 5098 Location: 61 6398-61 8657 bp Feature: gene Location: 1817344-1817847 bp Feature: gene Location: 1818010-1821231 bp Feature: gene Location: 1821810-1822913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1822035-1822650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 822035-1 822650 bp Feature: domain Description: GIIM Note: maturase Location: 1822722-1822908 bp Feature: domain Description: GIIM Note: maturase Location: 1 822722-1 822908 bp Feature: gene Location: 1823214-1823516 bp Feature: gene Location: 1823683-1824408 bp Feature: gene Location: 1825685-1825861 bp Feature: gene Location: 1826305-1826619 bp Feature: gene Location: 1826641-1827648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1826644-1827256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 826644-1 827256 bp Feature: domain Description: GIIM Note: maturase Location: 1827340-1827553 bp Feature: domain Description: GIIM Note: maturase Location: 1 827340-1 827553 bp Feature: gene Location: 1827975-1828469 bp Feature: gene Location: 1828478-1830757 bp Feature: domain Description: TssD Location: 1828907-1829174 bp Feature: domain Description: TssD Location: 1 828907-1 8291 74 bp Feature: domain Description: DUF3289 Location: 1830053-1830632 bp Feature: domain Description: DUF3289 Location: 1 830053-1 830632 bp Feature: gene Location: 2235533-2236102 bp Feature: domain Description: DEDDh Location: 2235542-2236073 bp Feature: domain Description: DEDDh Location: 2235542-2236073 bp Feature: gene Location: 2236121-2237572 bp Feature: domain Description: PRK14975 Location: 2236448-2237438 bp Feature: domain Description: PRK1 4975 Location: 2236448-2237438 bp Feature: gene Location: 2237569-2239962 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2238526-2239135 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2238526-22391 35 bp Feature: gene Location: 2239889-2240902 bp Feature: domain Description: ComA-like_MBL-fold Location: 2239895-2240627 bp Feature: domain Description: ComA-like_MBL-fold Location: 2239895-2240627 bp Feature: gene Location: 2240913-2242217 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2240961-2241531 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 2240961 -2241 531 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2241627-2242188 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 2241 627-22421 88 bp Feature: gene Location: 2278121-2279041 bp Feature: domain Description: COG3547 Location: 2278151-2278928 bp Feature: domain Description: COG3547 Location: 22781 51 -2278928 bp Feature: gene Location: 2279274-2280149 bp Feature: domain Description: Aes Location: 2279475-2279844 bp Feature: domain Description: Aes Location: 2279475-2279844 bp Feature: domain Description: MhpC Location: 2279946-2280105 bp Feature: domain Description: MhpC Location: 2279946-22801 05 bp Feature: gene Location: 2280221-2281591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2280560-2281205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2280560-2281 205 bp Feature: domain Description: GIIM Note: maturase Location: 2281289-2281502 bp Feature: domain Description: GIIM Note: maturase Location: 2281 289-2281 502 bp Feature: gene Location: 2282322-2283086 bp Feature: gene Location: 2283093-2283851 bp Feature: domain Description: thyA Location: 2283126-2283675 bp Feature: domain Description: thyA Location: 22831 26-2283675 bp Feature: gene Location: 2283854-2284018 bp Feature: gene Location: 2284065-2284616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2284068-2284227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2284068-2284227 bp Feature: domain Description: GIIM Note: maturase Location: 2284314-2284530 bp Feature: domain Description: GIIM Note: maturase Location: 228431 4-2284530 bp Feature: gene Location: 2284706-2285437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285045-2285426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285045-2285426 bp Feature: gene Location: 3253361-3253549 bp Feature: gene Location: 3253884-3254312 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3253893-3254196 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3253893-32541 96 bp Feature: gene Location: 3254316-3255260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254655-3255258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254655-3255258 bp Feature: gene Location: 3255787-3255984 bp Feature: gene Location: 3256140-3258353 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3256749-3257226 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3256749-3257226 bp Feature: gene Location: 3258346-3259818 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3258769-3259291 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3258769-3259291 bp Feature: gene Location: 3260141-3262444 bp Feature: domain Description: DEXHc_Ski2 Location: 3260423-3260882 bp Feature: domain Description: DEXHc_Ski2 Location: 3260423-3260882 bp Feature: domain Description: BRR2 Location: 3261233-3261578 bp Feature: domain Description: BRR2 Location: 3261 233-3261 578 bp Feature: gene Location: 3262441-3263124 bp Feature: gene Location: 3263688-3263942 bp Feature: domain Description: IstB_IS21 Location: 3263691-3263898 bp Feature: domain Description: IstB_IS21 Location: 3263691 -3263898 bp Feature: gene Location: 3264902-3265036 bp Feature: gene Location: 3265071-3265757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265080-3265365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265080-3265365 bp Feature: domain Description: GIIM Note: maturase Location: 3265449-3265665 bp Feature: domain Description: GIIM Note: maturase Location: 3265449-3265665 bp Feature: gene Location: 3265900-3266448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266239-3266392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266239-3266392 bp Feature: gene Location: 3267049-3268965 bp Feature: gene Location: 3269132-3270358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269321-3269966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269321 -3269966 bp Feature: domain Description: GIIM Note: maturase Location: 3270050-3270263 bp Feature: domain Description: GIIM Note: maturase Location: 3270050-3270263 bp Feature: gene Location: 3270367-3270507 bp Feature: gene Location: 3271113-3272498 bp Feature: domain Description: STKc_PknB_like Location: 3271122-3271908 bp Feature: domain Description: STKc_PknB_like Location: 3271 1 22-3271 908 bp Feature: gene Location: 3277773-3278090 bp Feature: domain Description: HTH_XRE Location: 3277908-3278046 bp Feature: domain Description: HTH_XRE Location: 3277908-3278046 bp Feature: gene Location: 3278143-3278415 bp Feature: domain Description: Gp49 Location: 3278191-3278413 bp Feature: domain Description: Gp49 Location: 32781 91 -327841 3 bp Feature: gene Location: 3279221-3280561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279446-3280061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279446-3280061 bp Feature: domain Description: GIIM Note: maturase Location: 3280133-3280346 bp Feature: domain Description: GIIM Note: maturase Location: 32801 33-3280346 bp Feature: gene Location: 3280779-3281159 bp Feature: gene Location: 3281239-3282267 bp Feature: domain Description: PHA02517 Location: 3281347-3282136 bp Feature: domain Description: PHA0251 7 Location: 3281 347-32821 36 bp Feature: gene Location: 3282643-3283452 bp Feature: domain Description: DDE_Tnp_1 Location: 3282655-3283180 bp Feature: domain Description: DDE_Tnp_1 Location: 3282655-32831 80 bp Feature: gene Location: 3283677-3287171 bp Feature: domain Description: CSP_CDS Location: 3283689-3283866 bp Feature: domain Description: CSP_CDS Location: 3283689-3283866 bp Feature: gene Location: 3287463-3288689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3287652-3288297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3287652-3288297 bp Feature: domain Description: GIIM Note: maturase Location: 3288381-3288594 bp Feature: domain Description: GIIM Note: maturase Location: 3288381 -3288594 bp Feature: gene Location: 3288698-3288838 bp Feature: gene Location: 3289629-3290693 bp Feature: domain Description: Phage_int_SAM_5 Location: 3289953-3290229 bp Feature: domain Description: Phage_int_SAM_5 Location: 3289953-3290229 bp Feature: domain Description: INTN1_C_like Location: 3290295-3290616 bp Feature: domain Description: INTN1 _C_like Location: 3290295-329061 6 bp Feature: gene Location: 3317514-3317870 bp Feature: domain Description: HigA Location: 3317520-3317859 bp Feature: domain Description: HigA Location: 331 7520-331 7859 bp Feature: gene Location: 3317875-3318168 bp Feature: domain Description: HigB Location: 3317878-3318163 bp Feature: domain Description: HigB Location: 331 7878-331 81 63 bp Feature: gene Location: 3318394-3319080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318403-3318688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 8403-331 8688 bp Feature: domain Description: GIIM Note: maturase Location: 3318772-3318988 bp Feature: domain Description: GIIM Note: maturase Location: 331 8772-331 8988 bp Feature: gene Location: 3319333-3319770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3319672-3319765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 9672-331 9765 bp Feature: gene Location: 3320384-3320776 bp Feature: domain Description: RloB Location: 3320402-3320753 bp Feature: domain Description: RloB Location: 3320402-3320753 bp Feature: gene Location: 3320937-3322202 bp Feature: domain Description: AAA_21 Location: 3321090-3322002 bp Feature: domain Description: AAA_21 Location: 3321 090-3322002 bp Feature: gene Location: 3326564-3326845 bp Feature: gene Location: 3326887-3327111 bp Feature: gene Location: 3327260-3328636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327599-3328244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327599-3328244 bp Feature: domain Description: GIIM Note: maturase Location: 3328328-3328541 bp Feature: domain Description: GIIM Note: maturase Location: 3328328-3328541 bp Feature: gene Location: 3329317-3330372 bp Feature: domain Description: TPR Location: 3329404-3329674 bp Feature: domain Description: TPR Location: 3329404-3329674 bp Feature: gene Location: 3330562-3330711 bp Feature: gene Location: 3876226-3877902 bp Feature: domain Description: AAA_15 Location: 3876241-3876448 bp Feature: domain Description: AAA_1 5 Location: 3876241 -3876448 bp Feature: domain Description: AAA_15 Location: 3876532-3877177 bp Feature: domain Description: AAA_1 5 Location: 3876532-38771 77 bp Feature: gene Location: 3879135-3879287 bp Feature: gene Location: 3879501-3879869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3879726-3879789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3879726-3879789 bp Feature: gene Location: 3880234-3880419 bp Feature: gene Location: 3880505-3880642 bp Feature: gene Location: 4001440-4002012 bp Feature: gene Location: 4002153-4003016 bp Feature: domain Description: CTP_transf_1 Location: 4002219-4003005 bp Feature: domain Description: CTP_transf_1 Location: 400221 9-4003005 bp Feature: gene Location: 4003194-4003346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003209-4003302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003209-4003302 bp Feature: gene Location: 4003449-4005497 bp Feature: domain Description: KOG0731 Location: 4003560-4005396 bp Feature: domain Description: KOG0731 Location: 4003560-4005396 bp Feature: gene Location: 4005520-4005894 bp Feature: domain Description: RsfS Location: 4005547-4005880 bp Feature: domain Description: RsfS Location: 4005547-4005880 bp Feature: gene Location: 4617812-4618135 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 4617821-4617998 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 461 7821 -461 7998 bp Feature: gene Location: 4619428-4619604 bp Feature: gene Location: 4620082-4620378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4620085-4620214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4620085-462021 4 bp Feature: gene Location: 4620506-4621930 bp Feature: domain Description: TlpA_like_family Location: 4621559-4621856 bp Feature: domain Description: TlpA_like_family Location: 4621 559-4621 856 bp Feature: gene Location: 4622164-4622472 bp Feature: gene Location: 4625157-4625306 bp Feature: gene Location: 4625467-4626384 bp Feature: domain Description: AraC Location: 4625494-4625815 bp Feature: domain Description: AraC Location: 4625494-462581 5 bp Feature: domain Description: SbmC Location: 4625935-4626382 bp Feature: domain Description: SbmC Location: 4625935-4626382 bp Feature: gene Location: 4627061-4628053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4627400-4628030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4627400-4628030 bp Feature: gene Location: 4628032-4628436 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4628035-4628320 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4628035-4628320 bp Feature: gene Location: 4628458-4629135 bp Feature: gene Location: 4639893-4640654 bp Feature: domain Description: PRK09183 Location: 4639911-4640625 bp Feature: domain Description: PRK091 83 Location: 463991 1 -4640625 bp Feature: gene Location: 4640658-4642217 bp Feature: domain Description: COG4584 Location: 4640691-4640790 bp Feature: domain Description: COG4584 Location: 4640691 -4640790 bp Feature: domain Description: COG4584 Location: 4641030-4641558 bp Feature: domain Description: COG4584 Location: 4641 030-4641 558 bp Feature: gene Location: 4642290-4643516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4642479-4643124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4642479-46431 24 bp Feature: domain Description: GIIM Note: maturase Location: 4643208-4643421 bp Feature: domain Description: GIIM Note: maturase Location: 4643208-4643421 bp Feature: gene Location: 4643742-4644536 bp Feature: domain Description: COG1373 Location: 4643760-4644510 bp Feature: domain Description: COG1 373 Location: 4643760-464451 0 bp Feature: gene Location: 4644613-4644756 bp Feature: gene Location: 5731112-5731750 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5731118-5731484 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5731 1 1 8-5731 484 bp Feature: gene Location: 5731810-5733117 bp Feature: domain Description: DDE_5 Location: 5731828-5732626 bp Feature: domain Description: DDE_5 Location: 5731 828-5732626 bp Feature: gene Location: 5733297-5733968 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5733480-5733957 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5733480-5733957 bp Feature: gene Location: 5734887-5736278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5735112-5735727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57351 1 2-5735727 bp Feature: domain Description: GIIM Note: maturase Location: 5735799-5736012 bp Feature: domain Description: GIIM Note: maturase Location: 5735799-573601 2 bp Feature: gene Location: 5736484-5740233 bp Feature: domain Description: rfc Location: 5737084-5737603 bp Feature: domain Description: rfc Location: 5737084-5737603 bp Feature: gene Location: 5740727-5740942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, couple_hipB (TIGR03070), couple_hipA (TIGR03071), DUF1735 (pfam08522), PKD (smart00089), Glyco_hydro_3 (pfam00933), PRK15098 (beta-glucosidase BglX), GIIM (pfam08388), TssD (pfam17642), DUF3289 (pfam11692)
DEDDh (cd06127), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9, ComA-like_MBL-fold (cd07731), RMtype1_S_SonII-TRD2-CR2_like (cd17246), COG3547 (Transposase ), Aes (COG0657), MhpC (COG0596), thyA (PRK13821), group_II_RT_mat (TIGR04416)
RVT-UG8, RVT-UG3, DEXHc_Ski2 (cd17921), BRR2 (COG1204), IstB_IS21 (pfam01695), STKc_PknB_like (cd14014), HTH_XRE (smart00530), Gp49 (pfam05973), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609)
CSP_CDS (cd04458), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HigA (COG5499), HigB (COG4680), RloB (pfam13707), AAA_21 (pfam13304), TPR (smart00028), AAA_15 (pfam13175), CTP_transf_1 (pfam01148)
KOG0731 (KOG0731, AAA+-type ATPase containing the peptidase M41 domain ), RsfS (pfam02410), DDE_Tnp_ISL3 (pfam01610), TlpA_like_family (cd02966), AraC (COG2207), SbmC (COG3449), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), COG1373 (Predicted ATPase, AAA+ superfamily ), DDE_5 (pfam13546)
RVT-UG17, rfc (TIGR00806)

Seq: KI912108.1 (50358 bp)
Overview 1 RT 1: 11505-17962 bp 2 RT 2: 29634-34134 bp 3 RT 3: 38646-43146 bp 4 RT 4: 48032-50037 bp Neighborhood of RT #1 [11505, 18012] recomb_XerD RVT-UG2 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 HTH_Tnp_1 RVT-UG2 GIIM DDE_Tnp_IS66_C Neighborhood of RT #2 [29634, 34134] group_II_RT_mat RVT-GII GIIM Neighborhood of RT #3 [38646, 43146] group_II_RT_mat RVT-GII GIIM Neighborhood of RT #4 [48032, 50042] group_II_RT_mat RVT-GII Feature: gene Location: 11505-11675 bp Feature: gene Location: 12167-12445 bp Feature: domain Description: recomb_XerD Location: 12221-12398 bp Feature: domain Description: recomb_XerD Location: 12 2 2 1-12 398 bp Feature: gene Location: 12887-13573 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13109-13487 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13109-13487 bp Feature: gene Location: 13580-15259 bp Feature: domain Description: LZ_Tnp_IS66 Location: 13763-14000 bp Feature: domain Description: LZ_Tnp_IS66 Location: 13763-14000 bp Feature: domain Description: zf-IS66 Location: 14036-14123 bp Feature: domain Description: zf-IS66 Location: 14036-1412 3 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14228-15068 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142 2 8-15068 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15089-15209 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15089-152 09 bp Feature: gene Location: 15354-15689 bp Feature: domain Description: TnpB_IS66 Location: 15381-15669 bp Feature: domain Description: TnpB_IS66 Location: 15381-15669 bp Feature: gene Location: 15695-16045 bp Feature: domain Description: HTH_Tnp_1 Location: 15737-15887 bp Feature: domain Description: HTH_Tnp_1 Location: 15737-15887 bp Feature: gene Location: 16177-17070 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 16207-16681 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 162 07-16681 bp Feature: gene Location: 17238-17633 bp Feature: domain Description: GIIM Note: maturase Location: 17265-17403 bp Feature: domain Description: GIIM Note: maturase Location: 172 65-17403 bp Feature: gene Location: 17725-18012 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17866-17962 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17866-17962 bp Feature: gene Location: 29634-29966 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 29637-29961 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 9637-2 9961 bp Feature: gene Location: 29968-30750 bp Feature: gene Location: 30772-31779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30775-31387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30775-31387 bp Feature: domain Description: GIIM Note: maturase Location: 31471-31684 bp Feature: domain Description: GIIM Note: maturase Location: 31471-31684 bp Feature: gene Location: 32106-32345 bp Feature: gene Location: 32593-34134 bp Feature: gene Location: 38646-38978 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38649-38973 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 38649-38973 bp Feature: gene Location: 38980-39762 bp Feature: gene Location: 39784-40791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39787-40399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39787-40399 bp Feature: domain Description: GIIM Note: maturase Location: 40483-40696 bp Feature: domain Description: GIIM Note: maturase Location: 40483-40696 bp Feature: gene Location: 41118-41357 bp Feature: gene Location: 41605-43146 bp Feature: gene Location: 48032-48277 bp Feature: gene Location: 49032-49460 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 49041-49344 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 49041-49344 bp Feature: gene Location: 49464-50042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49467-50037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49467-50037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerD (TIGR02225), RVT-UG2, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), GIIM (pfam08388), group_II_RT_mat (TIGR04416)
RVT-GII