myRT

myRT report for GCA_000517105.1_ASM51710v1

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Seq: KI912152.1 (451483 bp)
Overview 1 RT 1: 117123-122828 bp Neighborhood of RT #1 [117123, 122828] RVT_N RVT-GII Resolvase RVT-GII McrA Feature: gene Location: 117123-117302 bp Feature: gene Location: 117394-117603 bp Feature: gene Location: 117909-118490 bp Feature: domain Description: RVT_N Location: 117945-118179 bp Feature: domain Description: RVT_N Location: 1 1 7945-1 1 81 79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118236-118479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8236-1 1 8479 bp Feature: gene Location: 118902-119057 bp Feature: gene Location: 119098-119376 bp Feature: gene Location: 120194-120391 bp Feature: domain Description: Resolvase Location: 120233-120356 bp Feature: domain Description: Resolvase Location: 1 20233-1 20356 bp Feature: gene Location: 120398-120565 bp Feature: gene Location: 120841-121992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121012-121342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 01 2-1 21 342 bp Feature: domain Description: McrA Location: 121573-121897 bp Feature: domain Description: McrA Location: 1 21 573-1 21 897 bp Feature: gene Location: 122148-122396 bp Feature: gene Location: 122556-122828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), McrA (COG4058)

Seq: KI912150.1 (378745 bp)
Overview 1 RT 1: 307521-314535 bp Neighborhood of RT #1 [307521, 314535] RVT_N RVT-GII Recombinase Zn_ribbon_recom PinE RVT-GII Intron_maturas2 HNHc GIIM McrA Feature: gene Location: 307521-307910 bp Feature: gene Location: 308008-308235 bp Feature: gene Location: 309046-309615 bp Feature: domain Description: RVT_N Location: 309082-309328 bp Feature: domain Description: RVT_N Location: 309082 -30932 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309370-309604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309370-309604 bp Feature: gene Location: 309624-311204 bp Feature: domain Description: Recombinase Location: 309738-310080 bp Feature: domain Description: Recombinase Location: 309738-310080 bp Feature: domain Description: Zn_ribbon_recom Location: 310143-310302 bp Feature: domain Description: Zn_ribbon_recom Location: 310143-310302 bp Feature: gene Location: 311422-311676 bp Feature: domain Description: PinE Location: 311464-311662 bp Feature: domain Description: PinE Location: 311464-311662 bp Feature: gene Location: 311716-312081 bp Feature: gene Location: 312126-313394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312129-312633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 12 9-312 633 bp Feature: domain Description: Intron_maturas2 Location: 312738-312966 bp Feature: domain Description: Intron_maturas2 Location: 312 738-312 966 bp Feature: domain Description: HNHc Note: nucleases Location: 313155-313323 bp Feature: domain Description: HNHc Note: nucleases Location: 313155-31332 3 bp Feature: gene Location: 313529-314323 bp Feature: domain Description: GIIM Note: maturase Location: 313793-314027 bp Feature: domain Description: GIIM Note: maturase Location: 313793-31402 7 bp Feature: domain Description: McrA Location: 314111-314309 bp Feature: domain Description: McrA Location: 314111-314309 bp Feature: gene Location: 314362-314535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PinE (COG1961), Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), McrA (COG4058)

Seq: KI912153.1 (361506 bp)
Overview 1 RT 1: 55417-57895 bp 2 RT 2: 205803-208416 bp Neighborhood of RT #1 [55417, 57895] COG3791 RVT-GII McrA Neighborhood of RT #2 [205803, 208433] ALDH_F1AB_F2_RALDH1 ALDH_F1-2_Ald2-like DltE RVT-GII Intron_maturas2 HNHc MarR Feature: gene Location: 55417-55593 bp Feature: gene Location: 55849-56307 bp Feature: domain Description: COG3791 Location: 55897-56254 bp Feature: domain Description: COG3 791 Location: 55897-56254 bp Feature: gene Location: 56570-57217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56573-56639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56573 -5663 9 bp Feature: domain Description: McrA Location: 56876-57194 bp Feature: domain Description: McrA Location: 56876-57194 bp Feature: gene Location: 57149-57412 bp Feature: gene Location: 57710-57895 bp Feature: gene Location: 205803-206024 bp Feature: domain Description: ALDH_F1AB_F2_RALDH1 Location: 205857-205926 bp Feature: domain Description: ALDH_F1AB_F2_RALDH1 Location: 205857-205926 bp Feature: domain Description: ALDH_F1-2_Ald2-like Location: 205932-206019 bp Feature: domain Description: ALDH_F1-2_Ald2-like Location: 20593 2-206019 bp Feature: gene Location: 206068-206301 bp Feature: domain Description: DltE Location: 206077-206278 bp Feature: domain Description: DltE Location: 206077-206278 bp Feature: gene Location: 206573-207613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206660-206852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206660-206852 bp Feature: domain Description: Intron_maturas2 Location: 206957-207185 bp Feature: domain Description: Intron_maturas2 Location: 206957-207185 bp Feature: domain Description: HNHc Note: nucleases Location: 207374-207542 bp Feature: domain Description: HNHc Note: nucleases Location: 2073 74-207542 bp Feature: gene Location: 207694-207939 bp Feature: gene Location: 207987-208433 bp Feature: domain Description: MarR Location: 208059-208416 bp Feature: domain Description: MarR Location: 208059-208416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3791 (Uncharacterized conserved protein ), RVT-GII, McrA (COG4058), ALDH_F1AB_F2_RALDH1 (cd07141), ALDH_F1-2_Ald2-like (cd07091), DltE (COG3967), Intron_maturas2 (pfam01348), HNHc (smart00507), MarR (pfam01047)

Seq: KI912151.1 (1136461 bp)
Overview 1 RT 1: 622478-626099 bp Neighborhood of RT #1 [622478, 626099] HTH_XRE DUF4384 RVT-CRISPR cas1 Feature: gene Location: 622478-623335 bp Feature: domain Description: HTH_XRE Location: 622595-622757 bp Feature: domain Description: HTH_XRE Location: 622595-622757 bp Feature: domain Description: DUF4384 Location: 622952-623183 bp Feature: domain Description: DUF4 384 Location: 622952-623183 bp Feature: gene Location: 623472-623627 bp Feature: gene Location: 623891-624955 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 624080-624686 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 624 080-624 686 bp Feature: gene Location: 624995-625912 bp Feature: domain Description: cas1 Location: 625001-625883 bp Feature: domain Description: cas1 Location: 625001-625883 bp Feature: gene Location: 625941-626099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287)