myRT

myRT report for GCA_000517265.1_Photorhabdus_temperata_NC19

Download annotations/find similar RTs

Seq: AYSJ01000009.1 (195187 bp)
Overview 1 RT 1: 85975-88438 bp Neighborhood of RT #1 [85975, 88500] AbiEii COG5340 RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 85975-86895 bp Feature: domain Description: AbiEii Location: 86086-86788 bp Feature: domain Description: AbiEii Location: 86086-86788 bp Feature: gene Location: 86885-87421 bp Feature: domain Description: COG5340 Location: 86897-87230 bp Feature: domain Description: COG5340 Location: 86897-87230 bp Feature: gene Location: 87701-87886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87719-87866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8771 9-87866 bp Feature: gene Location: 87934-88113 bp Feature: gene Location: 88213-88500 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 88219-88438 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8821 9-88438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII, DDE_Tnp_Tn3 (pfam01526)

Seq: AYSJ01000008.1 (103868 bp)
Overview 1 RT 1: 40068-42235 bp Neighborhood of RT #1 [40068, 42235] ParE RVT-GII GIIM Feature: gene Location: 40068-40355 bp Feature: domain Description: ParE Location: 40071-40344 bp Feature: domain Description: ParE Location: 40071-40344 bp Feature: gene Location: 40352-40801 bp Feature: gene Location: 41089-41688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41092-41368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41092 -41368 bp Feature: domain Description: GIIM Note: maturase Location: 41449-41647 bp Feature: domain Description: GIIM Note: maturase Location: 41449-41647 bp Feature: gene Location: 41727-41879 bp Feature: gene Location: 42104-42235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-GII, GIIM (pfam08388)

Seq: AYSJ01000004.1 (562450 bp)
Overview 1 RT 1: 364646-367754 bp Neighborhood of RT #1 [364646, 367834] RVT-GII Intron_maturas2 RVT-GII DUF3396 Feature: gene Location: 364646-364855 bp Feature: gene Location: 364891-365241 bp Feature: gene Location: 365692-366636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365707-366277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 65707-3 66277 bp Feature: domain Description: Intron_maturas2 Location: 366388-366496 bp Feature: domain Description: Intron_maturas2 Location: 3 663 88-3 66496 bp Feature: gene Location: 366643-366927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366832-366925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6683 2-3 66925 bp Feature: gene Location: 366993-367280 bp Feature: gene Location: 367370-367834 bp Feature: domain Description: DUF3396 Location: 367508-367754 bp Feature: domain Description: DUF3 3 96 Location: 3 67508-3 67754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF3396 (pfam11876)

Seq: AYSJ01000002.1 (1070150 bp)
Overview 1 RT 1: 91264-95138 bp 2 RT 2: 603023-606374 bp Neighborhood of RT #1 [91264, 95140] TIGR02646 COG3950 RVT-Retrons FIDO Neighborhood of RT #2 [603023, 606374] HTH_XRE RVT-Retrons RVT-Retrons Feature: gene Location: 91264-91911 bp Feature: domain Description: TIGR02646 Location: 91333-91720 bp Feature: domain Description: TIGR0264 6 Location: 91333-91720 bp Feature: gene Location: 91914-93566 bp Feature: domain Description: COG3950 Location: 92112-93531 bp Feature: domain Description: COG3950 Location: 92112-93531 bp Feature: gene Location: 93563-94495 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93665-94262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93665-94 262 bp Feature: gene Location: 94482-94649 bp Feature: gene Location: 94928-95140 bp Feature: domain Description: FIDO Location: 94931-95138 bp Feature: domain Description: FIDO Location: 94 931-95138 bp Feature: gene Location: 603023-603409 bp Feature: gene Location: 603461-603751 bp Feature: domain Description: HTH_XRE Location: 603473-603638 bp Feature: domain Description: HTH_XRE Location: 6034 73-603638 bp Feature: gene Location: 603579-604067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 603882-604056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 603882-604 056 bp Feature: gene Location: 604015-604704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 604054-604450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 604 054 -604 4 50 bp Feature: gene Location: 604744-605331 bp Feature: gene Location: 605409-606374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, FIDO (COG2184), HTH_XRE (smart00530)

Seq: AYSJ01000013.1 (764493 bp)
Overview 1 RT 1: 629355-632518 bp Neighborhood of RT #1 [629355, 632518] DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 629355-629648 bp Feature: gene Location: 629661-630086 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 629763-630033 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 629763-630033 bp Feature: gene Location: 630157-631551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630511-631174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6305 11-631174 bp Feature: domain Description: GIIM Note: maturase Location: 631243-631471 bp Feature: domain Description: GIIM Note: maturase Location: 631243-631471 bp Feature: gene Location: 631863-631997 bp Feature: gene Location: 632372-632518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)