myRT

myRT report for GCA_000519185.1_ASM51918v1

Download annotations/find similar RTs

Seq: JAFA01000012.1 (239395 bp)
Overview 1 RT 1: 27049-30330 bp Neighborhood of RT #1 [27049, 30330] anti_R_Lar RVT-DGRs Avd_like Feature: gene Location: 27049-27324 bp Feature: gene Location: 27326-28108 bp Feature: domain Description: anti_R_Lar Location: 27341-27488 bp Feature: domain Description: anti_R_Lar Location: 27341 -27488 bp Feature: gene Location: 28127-29479 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28562-29249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28562-29249 bp Feature: gene Location: 29472-29849 bp Feature: domain Description: Avd_like Location: 29499-29805 bp Feature: domain Description: Avd_like Location: 29499-29805 bp Feature: gene Location: 29863-30330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT anti_R_Lar (TIGR03655), RVT-DGRs, Avd_like (cd16376)

Seq: JAFA01000084.1 (13279 bp)
Overview 1 RT 1: 2-3908 bp Neighborhood of RT #1 [2, 3985] PRK08181 RVT-GII RVT-GII PinE Zn_ribbon_recom Recombinase HTH_17 Phage_int_SAM_1 INT_RitC_C_like Feature: gene Location: 2-169 bp Feature: domain Description: PRK08181 Location: 5-122 bp Feature: domain Description: PRK08181 Location: 5-12 2 bp Feature: gene Location: 180-593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186-486 bp Feature: gene Location: 656-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-842 bp Feature: gene Location: 884-2794 bp Feature: domain Description: PinE Location: 899-1451 bp Feature: domain Description: PinE Location: 899-1451 bp Feature: domain Description: Zn_ribbon_recom Location: 1718-1895 bp Feature: domain Description: Zn_ribbon_recom Location: 1718-1895 bp Feature: domain Description: Recombinase Location: 2456-2540 bp Feature: domain Description: Recombinase Location: 2 456-2 540 bp Feature: domain Description: HTH_17 Location: 2594-2681 bp Feature: domain Description: HTH_17 Location: 2 594-2 681 bp Feature: gene Location: 3044-3985 bp Feature: domain Description: Phage_int_SAM_1 Location: 3050-3281 bp Feature: domain Description: Phage_int_SAM_1 Location: 3050-32 81 bp Feature: domain Description: INT_RitC_C_like Location: 3368-3908 bp Feature: domain Description: INT_RitC_C_like Location: 3368-3908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08181 (transposase; Validated), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_17 (pfam12728), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)

Seq: JAFA01000103.1 (4237 bp)
Overview 1 RT 1: 509-3632 bp Neighborhood of RT #1 [509, 3655] PHA02517 RVT-GII IS5 DUF772 Feature: gene Location: 509-694 bp Feature: domain Description: PHA02517 Location: 512-647 bp Feature: domain Description: PHA02517 Location: 512-647 bp Feature: gene Location: 899-1054 bp Feature: gene Location: 1369-3030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780-1960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780-1960 bp Feature: domain Description: IS5 Location: 2386-2995 bp Feature: domain Description: IS5 Location: 23 86-2995 bp Feature: gene Location: 3143-3361 bp Feature: gene Location: 3365-3655 bp Feature: domain Description: DUF772 Location: 3521-3632 bp Feature: domain Description: DUF772 Location: 3 521-3 63 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, IS5 (COG3039), DUF772 (pfam05598)

Seq: JAFA01000100.1 (5344 bp)
Overview 1 RT 1: 295-5343 bp Neighborhood of RT #1 [295, 5343] COG3547 RVT-GII gram_neg_porins Feature: gene Location: 295-1530 bp Feature: domain Description: COG3547 Location: 511-1474 bp Feature: domain Description: COG354 7 Location: 511-14 74 bp Feature: gene Location: 1457-2935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2555 bp Feature: gene Location: 3292-4677 bp Feature: domain Description: gram_neg_porins Location: 3580-4675 bp Feature: domain Description: gram_neg_porins Location: 3580-4 675 bp Feature: gene Location: 5116-5343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, gram_neg_porins (cd00342)

Seq: KI912596.1 (10359 bp)
Overview 1 RT 1: 770-6946 bp Neighborhood of RT #1 [770, 6966] PLP_SbnA_fam ParB_Srx_like_nuclease RVT-GII PHA02517 Feature: gene Location: 770-1789 bp Feature: domain Description: PLP_SbnA_fam Location: 794-1688 bp Feature: domain Description: PLP_SbnA_fam Location: 794-1688 bp Feature: gene Location: 2261-2674 bp Feature: domain Description: ParB_Srx_like_nuclease Location: 2306-2513 bp Feature: domain Description: ParB_Srx_like_nuclease Location: 2306-25 13 bp Feature: gene Location: 4151-5659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4577-5267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 77-5 267 bp Feature: gene Location: 5679-6017 bp Feature: gene Location: 6067-6966 bp Feature: domain Description: PHA02517 Location: 6292-6946 bp Feature: domain Description: PHA025 17 Location: 6292-6946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLP_SbnA_fam (TIGR03945), ParB_Srx_like_nuclease (cd16400), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)