myRT

myRT report for GCA_000519985.1_ASM51998v1

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Seq: KI913112.1 (4415514 bp)
Overview 1 RT 1: 10840-17646 bp 2 RT 2: 107081-111540 bp 3 RT 3: 1398962-1403889 bp 4 RT 4: 1479823-1485350 bp 5 RT 5: 1494273-1497147 bp 6 RT 6: 1502530-1505254 bp 7 RT 7: 2055176-2059978 bp 8 RT 8: 2066705-2079051 bp 9 RT 9: 2221495-2229216 bp 10 RT 10: 2711171-2713974 bp 11 RT 11: 3114984-3119191 bp 12 RT 12: 3541993-3544111 bp 13 RT 13: 3636327-3645372 bp Neighborhood of RT #1 [10840, 17646] TnpB_IS66 HTH_Tnp_1 RVT-GII GIIM Rhs_assc_core SMI1_KNR4 RVT-GII GIIM Neighborhood of RT #2 [107081, 111548] RVT-GII Transposase_mut Neighborhood of RT #3 [1398962, 1403918] RVT-Retrons guaA YhcC Neighborhood of RT #4 [1479823, 1485475] YgiQ HpnR_B12_rSAM HpnR_B12_rSAM RVT-UG26 HpnR_B12_rSAM Neighborhood of RT #5 [1494273, 1497147] DUF2220 HTH_Hin_like RVT-GII Neighborhood of RT #6 [1502530, 1505254] RVT-GII Neighborhood of RT #7 [2055176, 2060379] DUF4367 RpoE RVT-GII GIIM DUF362 Neighborhood of RT #8 [2066705, 2079266] COG5361 DUF1254 RVT-GII GIIM Resolvase Recombinase PHA02517 HTH_Tnp_1 RVT-GII GIIM RVT-GII GIIM RVT-GII pepcterm_ATPase HTH_28 rve Mu-transpos_C Neighborhood of RT #9 [2221495, 2229216] PRK04914 PRK04914 RVT-GII GIIM RVT-GII GIIM RVT-GII Neighborhood of RT #10 [2711171, 2713979] IS285 RVT-GII CBM_2 Neighborhood of RT #11 [3114984, 3119196] AAA_15 RVT-GII RVT-GII GIIM OmpR Neighborhood of RT #12 [3541993, 3544111] RVT-GII GIIM Neighborhood of RT #13 [3636327, 3645632] RVT-GII Transposase_mut RVT-GII HTH_Tnp_1 ATS1 ATS1 ATS1 Cu_amine_oxidN1 Feature: gene Location: 10840-11214 bp Feature: domain Description: TnpB_IS66 Location: 10888-11173 bp Feature: domain Description: TnpB_IS66 Location: 1 0888-1 1 1 73 bp Feature: gene Location: 11190-11543 bp Feature: domain Description: HTH_Tnp_1 Location: 11217-11349 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 21 7-1 1 349 bp Feature: gene Location: 11731-12975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11935-12592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 935-1 2592 bp Feature: domain Description: GIIM Note: maturase Location: 12673-12883 bp Feature: domain Description: GIIM Note: maturase Location: 1 2673-1 2883 bp Feature: gene Location: 13389-13778 bp Feature: domain Description: Rhs_assc_core Location: 13542-13659 bp Feature: domain Description: Rhs_assc_core Location: 1 3542-1 3659 bp Feature: gene Location: 14013-14795 bp Feature: gene Location: 14808-15440 bp Feature: domain Description: SMI1_KNR4 Location: 14868-15102 bp Feature: domain Description: SMI1 _KNR4 Location: 1 4868-1 51 02 bp Feature: gene Location: 15772-15900 bp Feature: gene Location: 16064-17005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16268-16925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6268-1 6925 bp Feature: gene Location: 17078-17308 bp Feature: domain Description: GIIM Note: maturase Location: 17081-17219 bp Feature: domain Description: GIIM Note: maturase Location: 1 7081 -1 721 9 bp Feature: gene Location: 17452-17646 bp Feature: gene Location: 107081-108055 bp Feature: gene Location: 108865-109077 bp Feature: gene Location: 109657-109785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109666-109765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09666-1 09765 bp Feature: gene Location: 110640-110810 bp Feature: gene Location: 111300-111548 bp Feature: domain Description: Transposase_mut Location: 111315-111540 bp Feature: domain Description: Transposase_mut Location: 1 1 1 31 5-1 1 1 540 bp Feature: gene Location: 1398962-1399693 bp Feature: gene Location: 1399881-1400273 bp Feature: gene Location: 1400561-1400896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1400777-1400894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 400777-1 400894 bp Feature: gene Location: 1401254-1402843 bp Feature: domain Description: guaA Location: 1401317-1402841 bp Feature: domain Description: guaA Location: 1 401 31 7-1 402841 bp Feature: gene Location: 1402980-1403918 bp Feature: domain Description: YhcC Location: 1402986-1403889 bp Feature: domain Description: YhcC Location: 1 402986-1 403889 bp Feature: gene Location: 1479823-1481133 bp Feature: domain Description: YgiQ Location: 1480000-1481002 bp Feature: domain Description: YgiQ Location: 1 480000-1 481 002 bp Feature: gene Location: 1481217-1482497 bp Feature: domain Description: HpnR_B12_rSAM Location: 1481220-1481538 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 1 481 220-1 481 538 bp Feature: domain Description: HpnR_B12_rSAM Location: 1481649-1482360 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 1 481 649-1 482360 bp Feature: gene Location: 1482598-1483824 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1482796-1483414 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1 482796-1 48341 4 bp Feature: gene Location: 1483874-1484059 bp Feature: gene Location: 1484117-1485475 bp Feature: domain Description: HpnR_B12_rSAM Location: 1484120-1485350 bp Feature: domain Description: HpnR_B1 2_rSAM Location: 1 4841 20-1 485350 bp Feature: gene Location: 1494273-1495319 bp Feature: domain Description: DUF2220 Location: 1494858-1495098 bp Feature: domain Description: DUF2220 Location: 1 494858-1 495098 bp Feature: gene Location: 1495492-1495632 bp Feature: domain Description: HTH_Hin_like Location: 1495543-1495627 bp Feature: domain Description: HTH_Hin_like Location: 1 495543-1 495627 bp Feature: gene Location: 1496555-1496686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496573-1496669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 496573-1 496669 bp Feature: gene Location: 1496742-1496933 bp Feature: gene Location: 1496983-1497147 bp Feature: gene Location: 1502530-1502667 bp Feature: gene Location: 1502703-1502837 bp Feature: gene Location: 1503817-1504014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503823-1504006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 503823-1 504006 bp Feature: gene Location: 1504447-1504575 bp Feature: gene Location: 1505003-1505254 bp Feature: gene Location: 2055176-2055871 bp Feature: domain Description: DUF4367 Location: 2055545-2055842 bp Feature: domain Description: DUF4367 Location: 2055545-2055842 bp Feature: gene Location: 2055861-2056454 bp Feature: domain Description: RpoE Location: 2055951-2056443 bp Feature: domain Description: RpoE Location: 2055951 -2056443 bp Feature: gene Location: 2056904-2058202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057204-2057843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057204-2057843 bp Feature: domain Description: GIIM Note: maturase Location: 2057921-2058143 bp Feature: domain Description: GIIM Note: maturase Location: 2057921 -20581 43 bp Feature: gene Location: 2058712-2058933 bp Feature: gene Location: 2059288-2060379 bp Feature: domain Description: DUF362 Location: 2059402-2059978 bp Feature: domain Description: DUF362 Location: 2059402-2059978 bp Feature: gene Location: 2066705-2067175 bp Feature: domain Description: COG5361 Location: 2066729-2067155 bp Feature: domain Description: COG5361 Location: 2066729-20671 55 bp Feature: gene Location: 2067181-2067612 bp Feature: domain Description: DUF1254 Location: 2067193-2067559 bp Feature: domain Description: DUF1 254 Location: 20671 93-2067559 bp Feature: gene Location: 2068186-2069484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068486-2069125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2068486-20691 25 bp Feature: domain Description: GIIM Note: maturase Location: 2069203-2069425 bp Feature: domain Description: GIIM Note: maturase Location: 2069203-2069425 bp Feature: gene Location: 2070135-2070323 bp Feature: gene Location: 2070344-2070916 bp Feature: domain Description: Resolvase Location: 2070365-2070707 bp Feature: domain Description: Resolvase Location: 2070365-2070707 bp Feature: domain Description: Recombinase Location: 2070776-2070884 bp Feature: domain Description: Recombinase Location: 2070776-2070884 bp Feature: gene Location: 2071548-2072309 bp Feature: domain Description: PHA02517 Location: 2071566-2072280 bp Feature: domain Description: PHA0251 7 Location: 2071 566-2072280 bp Feature: gene Location: 2072468-2072776 bp Feature: domain Description: HTH_Tnp_1 Location: 2072474-2072702 bp Feature: domain Description: HTH_Tnp_1 Location: 2072474-2072702 bp Feature: gene Location: 2073230-2073742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073233-2073383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2073233-2073383 bp Feature: domain Description: GIIM Note: maturase Location: 2073461-2073683 bp Feature: domain Description: GIIM Note: maturase Location: 2073461 -2073683 bp Feature: gene Location: 2073822-2075066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2074026-2074683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2074026-2074683 bp Feature: domain Description: GIIM Note: maturase Location: 2074764-2074980 bp Feature: domain Description: GIIM Note: maturase Location: 2074764-2074980 bp Feature: gene Location: 2075582-2076397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075882-2076371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075882-2076371 bp Feature: gene Location: 2077118-2077918 bp Feature: domain Description: pepcterm_ATPase Location: 2077121-2077904 bp Feature: domain Description: pepcterm_ATPase Location: 20771 21 -2077904 bp Feature: gene Location: 2077911-2079266 bp Feature: domain Description: HTH_28 Location: 2077950-2078124 bp Feature: domain Description: HTH_28 Location: 2077950-20781 24 bp Feature: domain Description: rve Location: 2078373-2078712 bp Feature: domain Description: rve Location: 2078373-207871 2 bp Feature: domain Description: Mu-transpos_C Location: 2078913-2079051 bp Feature: domain Description: Mu-transpos_C Location: 207891 3-2079051 bp Feature: gene Location: 2221495-2224332 bp Feature: domain Description: PRK04914 Location: 2221540-2222233 bp Feature: domain Description: PRK0491 4 Location: 2221 540-2222233 bp Feature: domain Description: PRK04914 Location: 2222944-2223433 bp Feature: domain Description: PRK0491 4 Location: 2222944-2223433 bp Feature: gene Location: 2224365-2224493 bp Feature: gene Location: 2224944-2225456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2224947-2225097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2224947-2225097 bp Feature: domain Description: GIIM Note: maturase Location: 2225175-2225397 bp Feature: domain Description: GIIM Note: maturase Location: 22251 75-2225397 bp Feature: gene Location: 2225536-2226780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225740-2226397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225740-2226397 bp Feature: domain Description: GIIM Note: maturase Location: 2226478-2226694 bp Feature: domain Description: GIIM Note: maturase Location: 2226478-2226694 bp Feature: gene Location: 2227296-2228111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227596-2228085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227596-2228085 bp Feature: gene Location: 2228550-2228795 bp Feature: gene Location: 2229025-2229216 bp Feature: gene Location: 2711171-2711506 bp Feature: domain Description: IS285 Location: 2711177-2711495 bp Feature: domain Description: IS285 Location: 271 1 1 77-271 1 495 bp Feature: gene Location: 2712035-2712169 bp Feature: gene Location: 2712190-2712831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2712394-2712817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 2394-271 281 7 bp Feature: gene Location: 2712995-2713123 bp Feature: gene Location: 2713587-2713979 bp Feature: domain Description: CBM_2 Location: 2713701-2713974 bp Feature: domain Description: CBM_2 Location: 271 3701 -271 3974 bp Feature: gene Location: 3114984-3115598 bp Feature: domain Description: AAA_15 Location: 3114987-3115500 bp Feature: domain Description: AAA_1 5 Location: 31 1 4987-31 1 5500 bp Feature: gene Location: 3116136-3116369 bp Feature: gene Location: 3116726-3117106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3116795-3117101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 6795-31 1 71 01 bp Feature: gene Location: 3117230-3117790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117251-3117428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7251 -31 1 7428 bp Feature: domain Description: GIIM Note: maturase Location: 3117515-3117725 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 751 5-31 1 7725 bp Feature: gene Location: 3117891-3118295 bp Feature: gene Location: 3118504-3119196 bp Feature: domain Description: OmpR Location: 3118513-3119191 bp Feature: domain Description: OmpR Location: 31 1 851 3-31 1 91 91 bp Feature: gene Location: 3541993-3542130 bp Feature: gene Location: 3542415-3542543 bp Feature: gene Location: 3542726-3543673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3542927-3543584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3542927-3543584 bp Feature: gene Location: 3543739-3543969 bp Feature: domain Description: GIIM Note: maturase Location: 3543742-3543880 bp Feature: domain Description: GIIM Note: maturase Location: 3543742-3543880 bp Feature: gene Location: 3543962-3544111 bp Feature: gene Location: 3636327-3638045 bp Feature: gene Location: 3638453-3638581 bp Feature: gene Location: 3638745-3639386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638949-3639372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3638949-3639372 bp Feature: gene Location: 3639407-3639541 bp Feature: gene Location: 3640633-3640914 bp Feature: domain Description: Transposase_mut Location: 3640642-3640909 bp Feature: domain Description: Transposase_mut Location: 3640642-3640909 bp Feature: gene Location: 3641230-3641871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641434-3641833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641 434-3641 833 bp Feature: gene Location: 3642084-3642485 bp Feature: domain Description: HTH_Tnp_1 Location: 3642132-3642243 bp Feature: domain Description: HTH_Tnp_1 Location: 36421 32-3642243 bp Feature: gene Location: 3642693-3645632 bp Feature: domain Description: ATS1 Location: 3642939-3643008 bp Feature: domain Description: ATS1 Location: 3642939-3643008 bp Feature: domain Description: ATS1 Location: 3643071-3643485 bp Feature: domain Description: ATS1 Location: 3643071 -3643485 bp Feature: domain Description: ATS1 Location: 3644712-3644895 bp Feature: domain Description: ATS1 Location: 364471 2-3644895 bp Feature: domain Description: Cu_amine_oxidN1 Location: 3645258-3645372 bp Feature: domain Description: Cu_amine_oxidN1 Location: 3645258-3645372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), Rhs_assc_core (TIGR03696), SMI1_KNR4 (smart00860), Transposase_mut (pfam00872), RVT-Retrons, guaA (PRK00074), YhcC (COG1242)
YgiQ (COG1032), HpnR_B12_rSAM (TIGR04367), RVT-UG26, DUF2220 (pfam09983), HTH_Hin_like (cd00569), DUF4367 (pfam14285), RpoE (COG3343), DUF362 (pfam04015), COG5361 (Uncharacterized conserved protein ), DUF1254 (pfam06863)
Resolvase (smart00857), Recombinase (pfam07508), PHA02517 (putative transposase OrfB; Reviewed), pepcterm_ATPase (TIGR03015), HTH_28 (pfam13518), rve (pfam00665), Mu-transpos_C (pfam09299), PRK04914 (RNA polymerase-associated protein RapA), IS285 (COG3328), CBM_2 (smart01065)
AAA_15 (pfam13175), OmpR (COG0745), ATS1 (COG5184), Cu_amine_oxidN1 (pfam07833)