myRT

myRT report for GCA_000520175.1_Pseu_aeru_PS50_V1

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Seq: KI914433.1 (5173728 bp)
Overview 1 RT 1: 672989-678103 bp 2 RT 2: 716288-726771 bp 3 RT 3: 743030-751867 bp 4 RT 4: 3842137-3847959 bp Neighborhood of RT #1 [672989, 678103] FACL_FadD13-like RVT-UG17 SLATT_5 Neighborhood of RT #2 [716288, 726773] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #3 [743030, 751896] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #4 [3842137, 3847976] clpP tig RVT_N RVT-GII GIIM HNH OmpR Feature: gene Location: 672989-674311 bp Feature: domain Description: FACL_FadD13-like Location: 672995-674261 bp Feature: domain Description: FACL_FadD1 3-like Location: 672995-674261 bp Feature: gene Location: 674851-675039 bp Feature: gene Location: 675145-676509 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 675373-675976 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 675373-675976 bp Feature: gene Location: 676509-677048 bp Feature: domain Description: SLATT_5 Location: 676515-677013 bp Feature: domain Description: SLATT_5 Location: 67651 5-67701 3 bp Feature: gene Location: 677705-678103 bp Feature: gene Location: 716288-716695 bp Feature: gene Location: 716707-717171 bp Feature: gene Location: 718310-719995 bp Feature: domain Description: RVT_N Location: 718367-718607 bp Feature: domain Description: RVT_N Location: 71 8367-71 8607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718655-719291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 8655-71 9291 bp Feature: domain Description: GIIM Note: maturase Location: 719345-719576 bp Feature: domain Description: GIIM Note: maturase Location: 71 9345-71 9576 bp Feature: domain Description: HNH Note: nucleases Location: 719828-719966 bp Feature: domain Description: HNH Note: nucleases Location: 71 9828-71 9966 bp Feature: gene Location: 721076-724813 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 721184-721841 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 721 1 84-721 841 bp Feature: domain Description: PRK09776 Location: 722054-722525 bp Feature: domain Description: PRK09776 Location: 722054-722525 bp Feature: domain Description: PAS Location: 722570-723107 bp Feature: domain Description: PAS Location: 722570-7231 07 bp Feature: domain Description: PRK10060 Location: 723116-724763 bp Feature: domain Description: PRK1 0060 Location: 7231 1 6-724763 bp Feature: gene Location: 724920-726773 bp Feature: domain Description: PRK05658 Location: 724932-726771 bp Feature: domain Description: PRK05658 Location: 724932-726771 bp Feature: gene Location: 743030-744244 bp Feature: domain Description: PRK10770 Location: 743042-744236 bp Feature: domain Description: PRK1 0770 Location: 743042-744236 bp Feature: gene Location: 744303-747092 bp Feature: domain Description: LptD Location: 744498-747078 bp Feature: domain Description: LptD Location: 744498-747078 bp Feature: gene Location: 747225-748937 bp Feature: domain Description: RVT_N Location: 747282-747525 bp Feature: domain Description: RVT_N Location: 747282-747525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747570-748206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747570-748206 bp Feature: domain Description: YkfC Location: 748416-748566 bp Feature: domain Description: YkfC Location: 74841 6-748566 bp Feature: domain Description: HNH Note: nucleases Location: 748743-748881 bp Feature: domain Description: HNH Note: nucleases Location: 748743-748881 bp Feature: gene Location: 750209-751225 bp Feature: domain Description: COG3178 Location: 750212-751211 bp Feature: domain Description: COG31 78 Location: 75021 2-751 21 1 bp Feature: gene Location: 751222-751896 bp Feature: domain Description: NTP_transferase_like_1 Location: 751228-751867 bp Feature: domain Description: NTP_transferase_like_1 Location: 751 228-751 867 bp Feature: gene Location: 3842137-3842778 bp Feature: domain Description: clpP Location: 3842191-3842767 bp Feature: domain Description: clpP Location: 38421 91 -3842767 bp Feature: gene Location: 3842872-3844140 bp Feature: domain Description: tig Location: 3842875-3844111 bp Feature: domain Description: tig Location: 3842875-38441 1 1 bp Feature: gene Location: 3844312-3846015 bp Feature: domain Description: RVT_N Location: 3844369-3844612 bp Feature: domain Description: RVT_N Location: 3844369-384461 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844657-3845293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3844657-3845293 bp Feature: domain Description: GIIM Note: maturase Location: 3845344-3845578 bp Feature: domain Description: GIIM Note: maturase Location: 3845344-3845578 bp Feature: domain Description: HNH Note: nucleases Location: 3845830-3845968 bp Feature: domain Description: HNH Note: nucleases Location: 3845830-3845968 bp Feature: gene Location: 3845801-3845935 bp Feature: gene Location: 3847269-3847976 bp Feature: domain Description: OmpR Location: 3847293-3847959 bp Feature: domain Description: OmpR Location: 3847293-3847959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), RVT-UG17, SLATT_5 (pfam18160), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), clpP, tig (TIGR00115), OmpR (COG0745)