myRT

myRT report for GCA_000520195.1_Pseu_aeru_PS42_V1

Download annotations/find similar RTs

Seq: KI914448.1 (1320883 bp)
Overview 1 RT 1: 743499-750265 bp Neighborhood of RT #1 [743499, 750265] TnpB_IS66 InsE RVT-UG5 YeeA Feature: gene Location: 743499-743789 bp Feature: domain Description: TnpB_IS66 Location: 743502-743760 bp Feature: domain Description: TnpB_IS66 Location: 743502-743760 bp Feature: gene Location: 743840-744232 bp Feature: domain Description: InsE Location: 743888-744113 bp Feature: domain Description: InsE Location: 743888-7441 1 3 bp Feature: gene Location: 744367-746628 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 744370-744556 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 744370-744556 bp Feature: gene Location: 747613-748395 bp Feature: domain Description: YeeA Location: 747637-748324 bp Feature: domain Description: YeeA Location: 747637-748324 bp Feature: gene Location: 749921-750265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-UG5, YeeA (COG1002)

Seq: KI914437.1 (2380072 bp)
Overview 1 RT 1: 2036306-2042226 bp Neighborhood of RT #1 [2036306, 2042226] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 2036306-2037028 bp Feature: domain Description: resist_ArsH Location: 2036330-2036984 bp Feature: domain Description: resist_ArsH Location: 2 036330-2 036984 bp Feature: gene Location: 2037087-2038346 bp Feature: domain Description: KOG0389 Location: 2037117-2037237 bp Feature: domain Description: KOG0389 Location: 2 037117-2 0372 37 bp Feature: domain Description: SF2_C_SNF Location: 2037786-2038182 bp Feature: domain Description: SF2 _C_SNF Location: 2 037786-2 038182 bp Feature: gene Location: 2038414-2040132 bp Feature: domain Description: RVT_N Location: 2038471-2038708 bp Feature: domain Description: RVT_N Location: 2 038471-2 038708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038759-2039410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 038759-2 039410 bp Feature: domain Description: GIIM Note: maturase Location: 2039464-2039695 bp Feature: domain Description: GIIM Note: maturase Location: 2 039464-2 039695 bp Feature: domain Description: HNHc Note: nucleases Location: 2039929-2040085 bp Feature: domain Description: HNHc Note: nucleases Location: 2 03992 9-2 040085 bp Feature: gene Location: 2040729-2041784 bp Feature: domain Description: DEXHc_Snf Location: 2040948-2041206 bp Feature: domain Description: DEXHc_Snf Location: 2 040948-2 0412 06 bp Feature: gene Location: 2041921-2042226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: KI914449.1 (1099866 bp)
Overview 1 RT 1: 1020809-1025929 bp Neighborhood of RT #1 [1020809, 1025940] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 1020809-1022137 bp Feature: domain Description: PRK13360 Location: 1020815-1022129 bp Feature: domain Description: PRK13 3 60 Location: 1020815-1022129 bp Feature: gene Location: 1022203-1022565 bp Feature: domain Description: COG3450 Location: 1022206-1022551 bp Feature: domain Description: COG3 450 Location: 1022206-1022551 bp Feature: gene Location: 1022778-1024475 bp Feature: domain Description: RVT_N Location: 1022835-1023078 bp Feature: domain Description: RVT_N Location: 102283 5-1023 078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023123-1023759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023 123 -1023 759 bp Feature: domain Description: YkfC Location: 1023981-1024116 bp Feature: domain Description: YkfC Location: 1023 981-1024116 bp Feature: domain Description: HNHc Note: nucleases Location: 1024263-1024428 bp Feature: domain Description: HNHc Note: nucleases Location: 1024263 -1024428 bp Feature: gene Location: 1025537-1025692 bp Feature: domain Description: rpmG Location: 1025540-1025684 bp Feature: domain Description: rpmG Location: 1025540-1025684 bp Feature: gene Location: 1025704-1025940 bp Feature: domain Description: RpmB Location: 1025707-1025929 bp Feature: domain Description: RpmB Location: 1025707-1025929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)

Seq: KI914451.1 (614256 bp)
Overview 1 RT 1: 253988-259249 bp Neighborhood of RT #1 [253988, 259413] PinE IS5 RVT-GII GIIM IS5 CzcO Feature: gene Location: 253988-254548 bp Feature: domain Description: PinE Location: 254006-254537 bp Feature: domain Description: PinE Location: 254 006-254 537 bp Feature: gene Location: 254879-255418 bp Feature: domain Description: IS5 Location: 255068-255395 bp Feature: domain Description: IS5 Location: 255068-255395 bp Feature: gene Location: 255911-257179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256124-256781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256124 -256781 bp Feature: domain Description: GIIM Note: maturase Location: 256859-257081 bp Feature: domain Description: GIIM Note: maturase Location: 256859-257081 bp Feature: gene Location: 257251-257709 bp Feature: domain Description: IS5 Location: 257254-257677 bp Feature: domain Description: IS5 Location: 257254 -257677 bp Feature: gene Location: 258028-259413 bp Feature: domain Description: CzcO Location: 258031-259249 bp Feature: domain Description: CzcO Location: 258031-25924 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), IS5 (COG3039), RVT-GII, GIIM (pfam08388), CzcO (COG2072)

Seq: KI914452.1 (590983 bp)
Overview 1 RT 1: 192838-199954 bp 2 RT 2: 274197-281694 bp Neighborhood of RT #1 [192838, 199965] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Neighborhood of RT #2 [274197, 281720] cysS PRK05347 RVT_N RVT-GII GIIM HNH PRK10791 lipid_A_lpxH Feature: gene Location: 192838-193479 bp Feature: domain Description: clpP Location: 192892-193468 bp Feature: domain Description: clpP Location: 192892-193468 bp Feature: gene Location: 193573-194841 bp Feature: domain Description: tig Location: 193576-194812 bp Feature: domain Description: tig Location: 1935 76-194812 bp Feature: gene Location: 195013-196716 bp Feature: domain Description: RVT_N Location: 195070-195313 bp Feature: domain Description: RVT_N Location: 195 070-195 313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195358-195994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195 35 8-195 994 bp Feature: domain Description: GIIM Note: maturase Location: 196045-196279 bp Feature: domain Description: GIIM Note: maturase Location: 196045 -196279 bp Feature: domain Description: HNH Note: nucleases Location: 196531-196669 bp Feature: domain Description: HNH Note: nucleases Location: 1965 31-196669 bp Feature: gene Location: 197971-198678 bp Feature: domain Description: OmpR Location: 197995-198661 bp Feature: domain Description: OmpR Location: 197995 -198661 bp Feature: gene Location: 198679-199965 bp Feature: domain Description: PRK10604 Location: 198682-199954 bp Feature: domain Description: PRK10604 Location: 198682-19995 4 bp Feature: gene Location: 274197-275579 bp Feature: domain Description: cysS Location: 274200-275571 bp Feature: domain Description: cysS Location: 274200-275 5 71 bp Feature: gene Location: 275589-277475 bp Feature: domain Description: PRK05347 Location: 275820-277467 bp Feature: domain Description: PRK05 347 Location: 275 820-277467 bp Feature: gene Location: 278658-280373 bp Feature: domain Description: RVT_N Location: 278712-278955 bp Feature: domain Description: RVT_N Location: 278712-27895 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279000-279636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279000-279636 bp Feature: domain Description: GIIM Note: maturase Location: 279699-279933 bp Feature: domain Description: GIIM Note: maturase Location: 279699-279933 bp Feature: domain Description: HNH Note: nucleases Location: 280185-280323 bp Feature: domain Description: HNH Note: nucleases Location: 280185 -280323 bp Feature: gene Location: 280496-280993 bp Feature: domain Description: PRK10791 Location: 280499-280985 bp Feature: domain Description: PRK10791 Location: 280499-280985 bp Feature: gene Location: 280998-281720 bp Feature: domain Description: lipid_A_lpxH Location: 281010-281694 bp Feature: domain Description: lipid_A_lpxH Location: 281010-281694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional), cysS (TIGR00435), PRK05347 (glutaminyl-tRNA synthetase; Provisional)
PRK10791 (peptidylprolyl isomerase B), lipid_A_lpxH (TIGR01854)

Seq: KI914450.1 (921507 bp)
Overview 1 RT 1: 124169-132359 bp 2 RT 2: 148623-158921 bp 3 RT 3: 785947-790543 bp 4 RT 4: 793335-798894 bp Neighborhood of RT #1 [124169, 132367] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [148623, 158932] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Neighborhood of RT #3 [785947, 790626] IS5 RVT-GII GIIM IS5 ABC_phnC Neighborhood of RT #4 [793335, 798941] LysR IS5 RVT-GII GIIM IS5 PRK09951 Feature: gene Location: 124169-125185 bp Feature: domain Description: COG3178 Location: 124172-125171 bp Feature: domain Description: COG3178 Location: 124172-125171 bp Feature: gene Location: 125482-125616 bp Feature: gene Location: 126457-128169 bp Feature: domain Description: RVT_N Location: 126514-126757 bp Feature: domain Description: RVT_N Location: 126 514-126 757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126802-127438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126 802-127438 bp Feature: domain Description: YkfC Location: 127648-127798 bp Feature: domain Description: YkfC Location: 1276 48-127798 bp Feature: domain Description: HNH Note: nucleases Location: 127975-128113 bp Feature: domain Description: HNH Note: nucleases Location: 127975-128113 bp Feature: gene Location: 128302-131094 bp Feature: domain Description: LptD Location: 128497-131080 bp Feature: domain Description: LptD Location: 128497-131080 bp Feature: gene Location: 131153-132367 bp Feature: domain Description: PRK10770 Location: 131165-132359 bp Feature: domain Description: PRK10770 Location: 13116 5-132359 bp Feature: gene Location: 148623-150476 bp Feature: domain Description: PRK05658 Location: 148635-150474 bp Feature: domain Description: PRK056 58 Location: 1486 35-150474 bp Feature: gene Location: 150583-154320 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150691-151348 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1506 91-151348 bp Feature: domain Description: PRK09776 Location: 151561-152032 bp Feature: domain Description: PRK09776 Location: 15156 1-152032 bp Feature: domain Description: PAS Location: 152122-152614 bp Feature: domain Description: PAS Location: 152122-1526 14 bp Feature: domain Description: PRK10060 Location: 152623-154270 bp Feature: domain Description: PRK1006 0 Location: 1526 23-154270 bp Feature: gene Location: 155401-157086 bp Feature: domain Description: RVT_N Location: 155458-155698 bp Feature: domain Description: RVT_N Location: 155458-1556 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155746-156382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155746 -156 382 bp Feature: domain Description: GIIM Note: maturase Location: 156436-156667 bp Feature: domain Description: GIIM Note: maturase Location: 156 436 -156 6 6 7 bp Feature: domain Description: HNH Note: nucleases Location: 156919-157057 bp Feature: domain Description: HNH Note: nucleases Location: 156 919-157057 bp Feature: gene Location: 157412-157549 bp Feature: gene Location: 157811-158932 bp Feature: domain Description: COG3177 Location: 157829-158921 bp Feature: domain Description: COG3177 Location: 157829-158921 bp Feature: gene Location: 785947-786318 bp Feature: gene Location: 786507-786965 bp Feature: domain Description: IS5 Location: 786510-786939 bp Feature: domain Description: IS5 Location: 786 510-786 939 bp Feature: gene Location: 787037-788305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787250-787907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787250-787907 bp Feature: domain Description: GIIM Note: maturase Location: 787985-788207 bp Feature: domain Description: GIIM Note: maturase Location: 787985-788207 bp Feature: gene Location: 788798-789337 bp Feature: domain Description: IS5 Location: 788987-789314 bp Feature: domain Description: IS5 Location: 788987-789314 bp Feature: gene Location: 789799-790626 bp Feature: domain Description: ABC_phnC Location: 789829-790543 bp Feature: domain Description: ABC_phnC Location: 789829-790543 bp Feature: gene Location: 793335-794204 bp Feature: domain Description: LysR Location: 793353-794157 bp Feature: domain Description: LysR Location: 793353-794157 bp Feature: gene Location: 794312-794845 bp Feature: domain Description: IS5 Location: 794501-794834 bp Feature: domain Description: IS5 Location: 794501-794834 bp Feature: gene Location: 795837-796943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795840-796437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795840-796 437 bp Feature: domain Description: GIIM Note: maturase Location: 796488-796722 bp Feature: domain Description: GIIM Note: maturase Location: 796 488-796 722 bp Feature: gene Location: 797055-797474 bp Feature: domain Description: IS5 Location: 797058-797442 bp Feature: domain Description: IS5 Location: 797058-797442 bp Feature: gene Location: 798237-798941 bp Feature: domain Description: PRK09951 Location: 798243-798894 bp Feature: domain Description: PRK09951 Location: 798243-798894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IS5 (COG3039), ABC_phnC (TIGR02315), LysR (COG0583), PRK09951 (hypothetical protein; Provisional)