myRT

myRT report for GCA_000522425.1_v3

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Seq: KI932329.1 (2253 bp)
Overview 1 RT 1: 3-780 bp Neighborhood of RT #1 [3, 2174] RVT-CRISPR-like Feature: gene Location: 3-2174 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 183-780 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 83-780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI931775.1 (40249 bp)
Overview 1 RT 1: 30264-34033 bp Neighborhood of RT #1 [30264, 34062] Prim_Pol RVT-UG4 PinE Feature: gene Location: 30264-31847 bp Feature: domain Description: Prim_Pol Location: 30417-30870 bp Feature: domain Description: Prim_Pol Location: 30417-30870 bp Feature: gene Location: 31824-32015 bp Feature: gene Location: 32138-32530 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32144-32264 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32 144-32 2 64 bp Feature: gene Location: 32544-33203 bp Feature: gene Location: 33490-34062 bp Feature: domain Description: PinE Location: 33493-34033 bp Feature: domain Description: PinE Location: 33493-34033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Pol (cd04859), RVT-UG4, PinE (COG1961)

Seq: KI932682.1 (35201 bp)
Overview 1 RT 1: 20995-26276 bp Neighborhood of RT #1 [20995, 26276] fabD pfaD_fam RVT-GII GIIM Feature: gene Location: 20995-23406 bp Feature: domain Description: fabD Location: 21004-21835 bp Feature: domain Description: fabD Location: 21004-2183 5 bp Feature: domain Description: pfaD_fam Location: 22057-23383 bp Feature: domain Description: pfaD_fam Location: 22057-23 3 83 bp Feature: gene Location: 23342-24862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23642-24263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 642-24263 bp Feature: domain Description: GIIM Note: maturase Location: 24317-24530 bp Feature: domain Description: GIIM Note: maturase Location: 243 17-2453 0 bp Feature: gene Location: 24731-25225 bp Feature: gene Location: 25701-26276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fabD (TIGR00128), pfaD_fam, RVT-GII, GIIM (pfam08388)

Seq: KI932421.1 (1446 bp)
Overview 1 RT 1: 460-1435 bp Neighborhood of RT #1 [460, 1443] RVT_N RVT-GII Feature: gene Location: 460-1443 bp Feature: domain Description: RVT_N Location: 505-751 bp Feature: domain Description: RVT_N Location: 505-751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-14 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: KI932331.1 (2235 bp)
Overview 1 RT 1: 234-1931 bp Neighborhood of RT #1 [234, 2233] RVT_N RVT-GII GIIM GIIM Feature: gene Location: 234-377 bp Feature: gene Location: 639-1811 bp Feature: domain Description: RVT_N Location: 690-930 bp Feature: domain Description: RVT_N Location: 690-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1626 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1806 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1806 bp Feature: gene Location: 1817-2233 bp Feature: domain Description: GIIM Note: maturase Location: 1823-1931 bp Feature: domain Description: GIIM Note: maturase Location: 1823-1931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KI931876.1 (20865 bp)
Overview 1 RT 1: 15021-19607 bp Neighborhood of RT #1 [15021, 19607] HTH_XRE RVT-DGRs COG5635 YfmG Feature: gene Location: 15021-15248 bp Feature: domain Description: HTH_XRE Location: 15033-15201 bp Feature: domain Description: HTH_XRE Location: 15033-15201 bp Feature: gene Location: 15543-15965 bp Feature: gene Location: 16027-16422 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16240-16396 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 240-16 396 bp Feature: gene Location: 16501-19158 bp Feature: domain Description: COG5635 Location: 16927-18079 bp Feature: domain Description: COG56 35 Location: 16 927-18079 bp Feature: domain Description: YfmG Location: 18505-19150 bp Feature: domain Description: YfmG Location: 18505-19150 bp Feature: gene Location: 19173-19607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262)

Seq: KI932348.1 (1970 bp)
Overview 1 RT 1: 167-1968 bp Neighborhood of RT #1 [167, 1968] RVT-GII GIIM Feature: gene Location: 167-1474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1181-1400 bp Feature: gene Location: 1632-1775 bp Feature: gene Location: 1798-1968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: KI931791.1 (36299 bp)
Overview 1 RT 1: 3-4391 bp Neighborhood of RT #1 [3, 4441] RVT-GII RVT-GII GIIM DDE_5 Feature: gene Location: 3-218 bp Feature: gene Location: 269-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-506 bp Feature: gene Location: 727-1221 bp Feature: gene Location: 2028-3620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2559-3246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2559-3246 bp Feature: domain Description: GIIM Note: maturase Location: 3318-3534 bp Feature: domain Description: GIIM Note: maturase Location: 3318 -3534 bp Feature: gene Location: 3920-4168 bp Feature: gene Location: 4226-4441 bp Feature: domain Description: DDE_5 Location: 4235-4391 bp Feature: domain Description: DDE_5 Location: 4235-4391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)

Seq: KI932172.1 (6462 bp)
Overview 1 RT 1: 2-6235 bp Neighborhood of RT #1 [2, 6327] SWIM RVT-Retrons WGR_DNA_ligase HEAT_2 COG4637 Feature: gene Location: 2-145 bp Feature: domain Description: SWIM Location: 32-122 bp Feature: domain Description: SWIM Location: 32-122 bp Feature: gene Location: 434-1861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1010-1625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1010-1625 bp Feature: gene Location: 1871-4951 bp Feature: domain Description: WGR_DNA_ligase Location: 1886-2111 bp Feature: domain Description: WGR_DNA_ligase Location: 1886-2111 bp Feature: domain Description: HEAT_2 Location: 2327-2525 bp Feature: domain Description: HEAT_2 Location: 2327-2525 bp Feature: gene Location: 5137-6327 bp Feature: domain Description: COG4637 Location: 5140-6235 bp Feature: domain Description: COG4637 Location: 5140-6235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), COG4637 (Predicted ATPase )

Seq: KI932199.1 (5965 bp)
Overview 1 RT 1: 2-2574 bp Neighborhood of RT #1 [2, 2574] RVT-UG4 PHA02517 Feature: gene Location: 2-766 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 176-626 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 176-626 bp Feature: gene Location: 1866-2201 bp Feature: domain Description: PHA02517 Location: 1872-2184 bp Feature: domain Description: PHA02517 Location: 1872-2184 bp Feature: gene Location: 2431-2574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PHA02517 (putative transposase OrfB; Reviewed)

Seq: KI931845.1 (26368 bp)
Overview 1 RT 1: 5443-9342 bp Neighborhood of RT #1 [5443, 9401] RVT-GII GIIM IlvB YejR Feature: gene Location: 5443-5607 bp Feature: gene Location: 5750-6217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5756-5849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5756-5849 bp Feature: domain Description: GIIM Note: maturase Location: 5921-6059 bp Feature: domain Description: GIIM Note: maturase Location: 5921-6059 bp Feature: gene Location: 6627-8321 bp Feature: domain Description: IlvB Location: 6642-8289 bp Feature: domain Description: IlvB Location: 6642-8289 bp Feature: gene Location: 8457-9401 bp Feature: domain Description: YejR Location: 8487-9342 bp Feature: domain Description: YejR Location: 8487-9342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IlvB (COG0028), YejR (COG0523)