myRT

myRT report for GCA_000522445.1_v3

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Seq: KI930839.1 (1930 bp)
Overview 1 RT 1: 3-1816 bp Neighborhood of RT #1 [3, 1816] RVT-CRISPR-like Feature: gene Location: 3-440 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12-378 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 2-378 bp Feature: gene Location: 467-1816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI930729.1 (2375 bp)
Overview 1 RT 1: 2-1337 bp Neighborhood of RT #1 [2, 1337] RVT-G2L4 Feature: gene Location: 2-1363 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1094-1361 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 1094-1361 bp Feature: gene Location: 873-1157 bp Feature: gene Location: 1206-1337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4

Seq: KI930216.1 (9142 bp)
Overview 1 RT 1: 3-5813 bp Neighborhood of RT #1 [3, 5813] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III TIGR03986 Feature: gene Location: 3-188 bp Feature: domain Description: Cas2_I_II_III Location: 45-186 bp Feature: domain Description: Cas2_I_II_III Location: 45-186 bp Feature: gene Location: 194-3124 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1220-1823 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1220-1823 bp Feature: domain Description: Cas1_I-II-III Location: 2126-3089 bp Feature: domain Description: Cas1_I-II-III Location: 2126-3 089 bp Feature: gene Location: 3127-5634 bp Feature: domain Description: TIGR03986 Location: 4276-5287 bp Feature: domain Description: TIGR03 986 Location: 4276-5287 bp Feature: gene Location: 5667-5813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein)

Seq: KI930248.1 (8764 bp)
Overview 1 RT 1: 6836-8514 bp Neighborhood of RT #1 [6836, 8514] RVT-UG4 Feature: gene Location: 6836-7399 bp Feature: gene Location: 7581-7817 bp Feature: gene Location: 7822-8274 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7825-7978 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7825-7978 bp Feature: gene Location: 8308-8514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: KI930310.1 (6906 bp)
Overview 1 RT 1: 3500-6036 bp Neighborhood of RT #1 [3500, 6737] RVT-DGRs Erythro_esteras Feature: gene Location: 3500-3883 bp Feature: gene Location: 4074-4295 bp Feature: gene Location: 4349-5470 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4697-5345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4697-5 345 bp Feature: gene Location: 5712-6737 bp Feature: domain Description: Erythro_esteras Location: 5757-6036 bp Feature: domain Description: Erythro_esteras Location: 5 75 7-6036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Erythro_esteras (pfam05139)

Seq: KI930601.1 (944 bp)
Overview 1 RT 1: 2-619 bp Neighborhood of RT #1 [2, 696] RVT-UG26 RT_RNaseH_2 Feature: gene Location: 2-376 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 68-272 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6 8-272 bp Feature: gene Location: 418-696 bp Feature: domain Description: RT_RNaseH_2 Location: 469-619 bp Feature: domain Description: RT_RNaseH_2 Location: 46 9-6 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RT_RNaseH_2 (pfam17919)

Seq: KI930279.1 (8125 bp)
Overview 1 RT 1: 3219-8047 bp Neighborhood of RT #1 [3219, 8047] F420_MSMEG_4879 retropepsin_like_LTR_2 RVT-GII RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3219-3845 bp Feature: domain Description: F420_MSMEG_4879 Location: 3225-3759 bp Feature: domain Description: F420_MSMEG_487 9 Location: 3225-37 59 bp Feature: gene Location: 3829-5436 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 5137-5335 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 5137 -5335 bp Feature: gene Location: 5442-7463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5931-6084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5931-6084 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 6375-6741 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 637 5-67 41 bp Feature: domain Description: Integrase_H2C2 Location: 7017-7179 bp Feature: domain Description: Integrase_H2C2 Location: 7 017 -7 17 9 bp Feature: domain Description: rve Location: 7269-7458 bp Feature: domain Description: rve Location: 7 269-7 458 bp Feature: gene Location: 7784-8047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F420_MSMEG_4879 (TIGR03564), retropepsin_like_LTR_2 (cd05484), RVT-GII, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: KI930493.1 (3960 bp)
Overview 1 RT 1: 480-3733 bp Neighborhood of RT #1 [480, 3957] retropepsin_like_LTR_2 RVT-UG11 RNase_HI_RT_Ty3 Feature: gene Location: 480-794 bp Feature: gene Location: 1143-1559 bp Feature: gene Location: 1525-3957 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 2026-2296 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 2026-2296 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2911-3031 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2911-3031 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3361-3733 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3361-3733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_LTR_2 (cd05484), RVT-UG11, RNase_HI_RT_Ty3 (cd09274)

Seq: KI931243.1 (980 bp)
Overview 1 RT 1: 35-977 bp Neighborhood of RT #1 [35, 979] RVT-GII Feature: gene Location: 35-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-9 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KI930962.1 (1548 bp)
Overview 1 RT 1: 143-1372 bp Neighborhood of RT #1 [143, 1458] RVT-GII RVT-GII GIIM Feature: gene Location: 143-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-848 bp Feature: gene Location: 880-1458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-10 87 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1372 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: KI930316.1 (3922 bp)
Overview 1 RT 1: 8-3921 bp Neighborhood of RT #1 [8, 3920] AIR1 gag-asp_proteas RVT-UNC RT_RNaseH_2 Feature: gene Location: 8-2173 bp Feature: domain Description: AIR1 Location: 1691-1916 bp Feature: domain Description: AIR1 Location: 1691-1916 bp Feature: domain Description: gag-asp_proteas Location: 1967-2054 bp Feature: domain Description: gag-asp_proteas Location: 1967-2054 bp Feature: gene Location: 2334-3920 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3270-3474 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3270-3474 bp Feature: domain Description: RT_RNaseH_2 Location: 3666-3921 bp Feature: domain Description: RT_RNaseH_2 Location: 3666-3921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), gag-asp_proteas (pfam13975), RVT-DGRs/RVT-UG20/RVT-UG11(RVT-UNC), RT_RNaseH_2 (pfam17919)

Seq: KI931225.1 (996 bp)
Overview 1 RT 1: 3-993 bp Neighborhood of RT #1 [3, 993] RVT-UG18 Feature: gene Location: 3-797 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 582-783 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 582-783 bp Feature: gene Location: 694-993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: KI930484.1 (4427 bp)
Overview 1 RT 1: 1-3682 bp Neighborhood of RT #1 [1, 4332] RVT-UNC SCAN ZnF_C2HC ZnF_C2HC gag-asp_proteas Feature: gene Location: 1-504 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 46-208 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 46-208 bp Feature: gene Location: 1872-2000 bp Feature: gene Location: 2350-4332 bp Feature: domain Description: SCAN Location: 2863-3121 bp Feature: domain Description: SCAN Location: 2863-3121 bp Feature: domain Description: ZnF_C2HC Location: 3187-3232 bp Feature: domain Description: ZnF_C2HC Location: 3187-3232 bp Feature: domain Description: ZnF_C2HC Location: 3319-3364 bp Feature: domain Description: ZnF_C2HC Location: 3319-3364 bp Feature: domain Description: gag-asp_proteas Location: 3439-3682 bp Feature: domain Description: gag-asp_proteas Location: 3439-3682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-GII/RVT-UG20/RVT-UNC(RVT-UNC), SCAN (smart00431), ZnF_C2HC (smart00343), gag-asp_proteas (pfam13975)

Seq: KI930756.1 (1728 bp)
Overview 1 RT 1: 3-1725 bp Neighborhood of RT #1 [3, 1725] RVT-CRISPR-like Feature: gene Location: 3-521 bp Feature: gene Location: 596-919 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 611-848 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 611-848 bp Feature: gene Location: 1081-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI930429.1 (3292 bp)
Overview 1 RT 1: 187-3258 bp Neighborhood of RT #1 [187, 3290] zf-CCHC retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Feature: gene Location: 187-1059 bp Feature: domain Description: zf-CCHC Location: 958-1003 bp Feature: domain Description: zf-CCHC Location: 958-1003 bp Feature: gene Location: 1128-3290 bp Feature: domain Description: retropepsin_like Location: 1140-1389 bp Feature: domain Description: retropepsin_like Location: 1140-1389 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2409-2610 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2409-2610 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2904-3258 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2904-3258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-CCHC (pfam00098), retropepsin_like (cd00303), RVT-DGRs/RVT-CRISPR/RVT-UG10(RVT-UNC), RNase_HI_RT_Ty3 (cd09274)

Seq: KI931087.1 (1257 bp)
Overview 1 RT 1: 2-461 bp Neighborhood of RT #1 [2, 1255] RVT-CRISPR-like Feature: gene Location: 2-1255 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 14-461 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 14-461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI930424.1 (4670 bp)
Overview 1 RT 1: 2073-4667 bp Neighborhood of RT #1 [2073, 4667] COG3415 GIIM HNHc RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 2073-2630 bp Feature: domain Description: COG3415 Location: 2139-2484 bp Feature: domain Description: COG3415 Location: 2139-2484 bp Feature: gene Location: 2672-3217 bp Feature: domain Description: GIIM Note: maturase Location: 2678-2786 bp Feature: domain Description: GIIM Note: maturase Location: 2678-2786 bp Feature: domain Description: HNHc Note: nucleases Location: 3011-3170 bp Feature: domain Description: HNHc Note: nucleases Location: 3011-317 0 bp Feature: gene Location: 3223-3735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3226-3550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3226-3550 bp Feature: domain Description: GIIM Note: maturase Location: 3601-3730 bp Feature: domain Description: GIIM Note: maturase Location: 3601-3730 bp Feature: gene Location: 3669-4301 bp Feature: domain Description: RVT_N Location: 3690-3849 bp Feature: domain Description: RVT_N Location: 3690-3849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4209 bp Feature: gene Location: 4473-4667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655)

Seq: KI930814.1 (2002 bp)
Overview 1 RT 1: 313-1798 bp Neighborhood of RT #1 [313, 2001] RVT-GII Intron_maturas2 Feature: gene Location: 313-2001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580-1414 bp Feature: domain Description: Intron_maturas2 Location: 1501-1798 bp Feature: domain Description: Intron_maturas2 Location: 1501-1798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: KI931712.1 (516 bp)
Overview 1 RT 1: 1-151 bp Neighborhood of RT #1 [1, 201] RVT-Retrons Feature: gene Location: 1-201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13-151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13-151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: KI930973.1 (625 bp)
Overview 1 RT 1: 2-569 bp Neighborhood of RT #1 [2, 622] RVT-GII Feature: gene Location: 2-622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KI930622.1 (2967 bp)
Overview 1 RT 1: 1-2964 bp Neighborhood of RT #1 [1, 2964] RT_nLTR_like RVT-UNC Feature: gene Location: 1-1749 bp Feature: domain Description: RT_nLTR_like Location: 1045-1444 bp Feature: domain Description: RT_nLTR_like Location: 1045-1444 bp Feature: gene Location: 1571-2359 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1589-1721 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1589-1721 bp Feature: gene Location: 2485-2964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-GII/RVT-DGRs/RVT-UG19/RVT-Retrons(RVT-UNC)

Seq: KI930447.1 (4280 bp)
Overview 1 RT 1: 3-1862 bp Neighborhood of RT #1 [3, 1921] RVT-UNC retropepsin_like_LTR_2 RT_ZFREV_like KOG4400 Feature: gene Location: 3-218 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 66-198 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 66-198 bp Feature: gene Location: 349-1188 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 493-772 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 493-772 bp Feature: domain Description: RT_ZFREV_like Location: 979-1135 bp Feature: domain Description: RT_ZFREV_like Location: 979-1135 bp Feature: gene Location: 1205-1921 bp Feature: domain Description: KOG4400 Location: 1682-1862 bp Feature: domain Description: KOG4400 Location: 1682-1862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7/RVT-UG20/RVT-GII/RVT-UG17(RVT-UNC), retropepsin_like_LTR_2 (cd05484), RT_ZFREV_like (cd03715), KOG4400 (KOG4400, E3 ubiquitin ligase interacting with arginine methyltransferase )

Seq: KI930212.1 (1108 bp)
Overview 1 RT 1: 3-921 bp Neighborhood of RT #1 [3, 1106] RVT-G2L4 RNase_HI_RT_DIRS1 Feature: gene Location: 3-1106 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 51-237 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 51-23 7 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 573-921 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 573-921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, RNase_HI_RT_DIRS1 (cd09275)

Seq: KI930693.1 (1162 bp)
Overview 1 RT 1: 3-885 bp Neighborhood of RT #1 [3, 1160] RVT-CRISPR-like Feature: gene Location: 3-1160 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 372-885 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 372-885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI930584.1 (3376 bp)
Overview 1 RT 1: 2-3374 bp Neighborhood of RT #1 [2, 3374] RNase_HI_RT_Ty3 Integrase_H2C2 RVT-UNC Feature: gene Location: 2-706 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 14-326 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 14-326 bp Feature: domain Description: Integrase_H2C2 Location: 584-707 bp Feature: domain Description: Integrase_H2C2 Location: 584-707 bp Feature: gene Location: 706-1371 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 877-1000 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 877-1000 bp Feature: gene Location: 2732-3145 bp Feature: gene Location: 3234-3374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), RVT-UG20/RVT-UG13/RVT-UG22/RVT-Retrons(RVT-UNC)

Seq: KI930659.1 (3149 bp)
Overview 1 RT 1: 1-2447 bp Neighborhood of RT #1 [1, 2500] RVT-UG4 HicB_lk_antitox Feature: gene Location: 1-183 bp Feature: gene Location: 255-518 bp Feature: gene Location: 562-1071 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 565-790 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 565-790 bp Feature: gene Location: 1836-2162 bp Feature: gene Location: 2240-2500 bp Feature: domain Description: HicB_lk_antitox Location: 2246-2447 bp Feature: domain Description: HicB_lk_antitox Location: 2246-2447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, HicB_lk_antitox (pfam15919)

Seq: KI930458.1 (4397 bp)
Overview 1 RT 1: 385-3507 bp Neighborhood of RT #1 [385, 4130] PTZ00368 RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 385-801 bp Feature: domain Description: PTZ00368 Location: 487-676 bp Feature: domain Description: PTZ00368 Location: 487-676 bp Feature: gene Location: 1317-1607 bp Feature: gene Location: 1344-4130 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1677-1869 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1677-1869 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2157-2727 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2157-27 27 bp Feature: domain Description: Integrase_H2C2 Location: 2982-3144 bp Feature: domain Description: Integrase_H2C2 Location: 2982-3144 bp Feature: domain Description: rve Location: 3189-3507 bp Feature: domain Description: rve Location: 3189-3507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTZ00368 (universal minicircle sequence binding protein (UMSBP); Provisional), RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: KI930497.1 (4256 bp)
Overview 1 RT 1: 2-4253 bp Neighborhood of RT #1 [2, 4253] retropepsin_like_LTR_2 RVT-UNC Feature: gene Location: 2-763 bp Feature: gene Location: 977-2215 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 986-1244 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 986-1244 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1853-1982 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1853-1982 bp Feature: gene Location: 2466-3377 bp Feature: gene Location: 3705-4253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_LTR_2 (cd05484), RVT-UG25/RVT-Retrons/RVT-CRISPR/RVT-UG17(RVT-UNC)

Seq: KI930323.1 (3397 bp)
Overview 1 RT 1: 3-3202 bp Neighborhood of RT #1 [3, 3202] RVT-CRISPR-like Feature: gene Location: 3-905 bp Feature: gene Location: 980-2725 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1781-2333 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1781-2333 bp Feature: gene Location: 2786-3202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI931036.1 (1357 bp)
Overview 1 RT 1: 2-874 bp Neighborhood of RT #1 [2, 924] RVT-UNC RNase_HI_RT_Ty3 Feature: gene Location: 2-226 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 35-221 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 35-221 bp Feature: gene Location: 271-924 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 520-874 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 520-874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UNC/RVT-UG26/RVT-DGRs/RVT-UG23(RVT-UNC), RNase_HI_RT_Ty3 (cd09274)

Seq: KI929862.1 (28364 bp)
Overview 1 RT 1: 22664-28316 bp Neighborhood of RT #1 [22664, 28363] Phage_int_SAM_4 RVT-GII GIIM HNHc Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 22664-22975 bp Feature: domain Description: Phage_int_SAM_4 Location: 22676-22928 bp Feature: domain Description: Phage_int_SAM_4 Location: 22676-22928 bp Feature: gene Location: 23608-24384 bp Feature: gene Location: 24612-26240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24849-25530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24849-25530 bp Feature: domain Description: GIIM Note: maturase Location: 25599-25815 bp Feature: domain Description: GIIM Note: maturase Location: 25599-25815 bp Feature: domain Description: HNHc Note: nucleases Location: 26052-26202 bp Feature: domain Description: HNHc Note: nucleases Location: 26052-26202 bp Feature: gene Location: 26376-27386 bp Feature: domain Description: Phage_int_SAM_1 Location: 26421-26673 bp Feature: domain Description: Phage_int_SAM_1 Location: 26421-26673 bp Feature: domain Description: INT_RitC_C_like Location: 26754-27306 bp Feature: domain Description: INT_RitC_C_like Location: 26754-27306 bp Feature: gene Location: 27383-28363 bp Feature: domain Description: INT_RitB_C_like Location: 27731-28316 bp Feature: domain Description: INT_RitB_C_like Location: 27731 -2831 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: KI930660.1 (2713 bp)
Overview 1 RT 1: 39-2681 bp Neighborhood of RT #1 [39, 2710] RVT-UG11 RNase_HI_RT_DIRS1 Dam Feature: gene Location: 39-368 bp Feature: gene Location: 356-1246 bp Feature: gene Location: 1342-1737 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1366-1696 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1366-1696 bp Feature: gene Location: 1739-2710 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 2063-2414 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 2063-2414 bp Feature: domain Description: Dam Location: 2426-2681 bp Feature: domain Description: Dam Location: 2426-2681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, RNase_HI_RT_DIRS1 (cd09275), Dam (pfam05869)

Seq: KI930574.1 (3338 bp)
Overview 1 RT 1: 302-3336 bp Neighborhood of RT #1 [302, 3335] INT_Rci_Hp1_C RVT_N RVT-GII Phage_int_SAM_1 INT_RitA_C_like Feature: gene Location: 302-679 bp Feature: domain Description: INT_Rci_Hp1_C Location: 353-566 bp Feature: domain Description: INT_Rci_Hp1_C Location: 353-566 bp Feature: gene Location: 1382-2008 bp Feature: domain Description: RVT_N Location: 1439-1685 bp Feature: domain Description: RVT_N Location: 1439-1685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727-1946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727-1946 bp Feature: gene Location: 2118-3335 bp Feature: domain Description: Phage_int_SAM_1 Location: 2487-2727 bp Feature: domain Description: Phage_int_SAM_1 Location: 2487-2727 bp Feature: domain Description: INT_RitA_C_like Location: 2811-3336 bp Feature: domain Description: INT_RitA_C_like Location: 2811-33 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188)

Seq: KI930571.1 (3071 bp)
Overview 1 RT 1: 2-2858 bp Neighborhood of RT #1 [2, 2858] RVT-CRISPR-like Feature: gene Location: 2-1267 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26-413 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26-413 bp Feature: gene Location: 1296-2039 bp Feature: gene Location: 2523-2858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: KI930680.1 (2598 bp)
Overview 1 RT 1: 206-1946 bp Neighborhood of RT #1 [206, 2596] RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 206-2596 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 347-464 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 347-464 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 794-1166 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 794-1166 bp Feature: domain Description: Integrase_H2C2 Location: 1421-1583 bp Feature: domain Description: Integrase_H2C2 Location: 1421-1583 bp Feature: domain Description: rve Location: 1637-1946 bp Feature: domain Description: rve Location: 1637-1946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: KI931093.1 (1234 bp)
Overview 1 RT 1: 88-1193 bp Neighborhood of RT #1 [88, 1231] RVT-UG5 Feature: gene Location: 88-306 bp Feature: gene Location: 851-1231 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 896-1193 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 896-1193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: KI930503.1 (4212 bp)
Overview 1 RT 1: 638-3618 bp Neighborhood of RT #1 [638, 4193] RVT-UG26 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 638-880 bp Feature: gene Location: 1596-4193 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2022-2160 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2022-2160 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2454-2823 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2454-2823 bp Feature: domain Description: Integrase_H2C2 Location: 3099-3258 bp Feature: domain Description: Integrase_H2C2 Location: 3099-3258 bp Feature: domain Description: rve Location: 3345-3618 bp Feature: domain Description: rve Location: 3345-3618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: KI930482.1 (4044 bp)
Overview 1 RT 1: 1038-3965 bp Neighborhood of RT #1 [1038, 4042] COG1569 PinE RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1038-1511 bp Feature: domain Description: COG1569 Location: 1071-1473 bp Feature: domain Description: COG1569 Location: 1071-1473 bp Feature: gene Location: 1579-2271 bp Feature: domain Description: PinE Location: 1597-2167 bp Feature: domain Description: PinE Location: 1597-2167 bp Feature: gene Location: 2405-4042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2432-3263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2432-3263 bp Feature: domain Description: Intron_maturas2 Location: 3350-3674 bp Feature: domain Description: Intron_maturas2 Location: 3350-3674 bp Feature: domain Description: HNHc Note: nucleases Location: 3779-3965 bp Feature: domain Description: HNHc Note: nucleases Location: 3779-3965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), PinE (COG1961), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KI929881.1 (28867 bp)
Overview 1 RT 1: 1-3620 bp Neighborhood of RT #1 [1, 3620] YfmG RVT-DGRs Avd_like Feature: gene Location: 1-1362 bp Feature: domain Description: YfmG Location: 529-1339 bp Feature: domain Description: YfmG Location: 529-1339 bp Feature: gene Location: 1441-1719 bp Feature: gene Location: 1765-2514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1987-2512 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1987-2512 bp Feature: gene Location: 2948-3286 bp Feature: domain Description: Avd_like Location: 2969-3281 bp Feature: domain Description: Avd_like Location: 2969-3281 bp Feature: gene Location: 3372-3620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)