myRT

myRT report for GCA_000526495.1_ASM52649v1

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Seq: JAGE01000001.1 (3589078 bp)
Overview 1 RT 1: 1010453-1014881 bp 2 RT 2: 1063855-1068466 bp 3 RT 3: 1084894-1090054 bp 4 RT 4: 1213825-1219015 bp Neighborhood of RT #1 [1010453, 1014931] VanZ AcrR RVT-GII HTH_3 lp_hng_hel_AbrB ABC2_membrane_5 Neighborhood of RT #2 [1063855, 1068474] PRK09183 RVT-GII GIIM HTH_ARAC YdeE Neighborhood of RT #3 [1084894, 1090110] DDE_Tnp_IS240 RVT-GII RVT-GII CcmA Neighborhood of RT #4 [1213825, 1219015] DUF3852 RVT-GII Intron_maturas2 Feature: gene Location: 1010453-1011019 bp Feature: domain Description: VanZ Location: 1010525-1010984 bp Feature: domain Description: VanZ Location: 1 01 0525-1 01 0984 bp Feature: gene Location: 1011063-1011638 bp Feature: domain Description: AcrR Location: 1011075-1011405 bp Feature: domain Description: AcrR Location: 1 01 1 075-1 01 1 405 bp Feature: gene Location: 1012109-1013251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012409-1013048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 2409-1 01 3048 bp Feature: gene Location: 1013829-1014263 bp Feature: domain Description: HTH_3 Location: 1013856-1014006 bp Feature: domain Description: HTH_3 Location: 1 01 3856-1 01 4006 bp Feature: domain Description: lp_hng_hel_AbrB Location: 1014084-1014207 bp Feature: domain Description: lp_hng_hel_AbrB Location: 1 01 4084-1 01 4207 bp Feature: gene Location: 1014278-1014931 bp Feature: domain Description: ABC2_membrane_5 Location: 1014290-1014881 bp Feature: domain Description: ABC2_membrane_5 Location: 1 01 4290-1 01 4881 bp Feature: gene Location: 1063855-1064613 bp Feature: domain Description: PRK09183 Location: 1063879-1064587 bp Feature: domain Description: PRK091 83 Location: 1 063879-1 064587 bp Feature: gene Location: 1064673-1065173 bp Feature: gene Location: 1065465-1066763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065765-1066404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 065765-1 066404 bp Feature: domain Description: GIIM Note: maturase Location: 1066482-1066704 bp Feature: domain Description: GIIM Note: maturase Location: 1 066482-1 066704 bp Feature: gene Location: 1067336-1067470 bp Feature: gene Location: 1067596-1068474 bp Feature: domain Description: HTH_ARAC Location: 1067662-1067908 bp Feature: domain Description: HTH_ARAC Location: 1 067662-1 067908 bp Feature: domain Description: YdeE Location: 1067980-1068466 bp Feature: domain Description: YdeE Location: 1 067980-1 068466 bp Feature: gene Location: 1084894-1085283 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1084924-1085215 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1 084924-1 08521 5 bp Feature: gene Location: 1085290-1085961 bp Feature: gene Location: 1086456-1087142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086492-1086939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 086492-1 086939 bp Feature: gene Location: 1087094-1087597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1087394-1087535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 087394-1 087535 bp Feature: gene Location: 1088195-1089400 bp Feature: gene Location: 1089397-1090110 bp Feature: domain Description: CcmA Location: 1089400-1090054 bp Feature: domain Description: CcmA Location: 1 089400-1 090054 bp Feature: gene Location: 1213825-1214163 bp Feature: domain Description: DUF3852 Location: 1213834-1214155 bp Feature: domain Description: DUF3852 Location: 1 21 3834-1 21 41 55 bp Feature: gene Location: 1214257-1214562 bp Feature: gene Location: 1214714-1216495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214984-1215794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 4984-1 21 5794 bp Feature: domain Description: Intron_maturas2 Location: 1215863-1216175 bp Feature: domain Description: Intron_maturas2 Location: 1 21 5863-1 21 61 75 bp Feature: gene Location: 1217006-1218376 bp Feature: gene Location: 1218452-1219015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), AcrR (COG1309), RVT-GII, HTH_3 (pfam01381), lp_hng_hel_AbrB (TIGR01439), ABC2_membrane_5 (pfam13346), PRK09183 (transposase/IS protein; Provisional), GIIM (pfam08388), HTH_ARAC (smart00342), YdeE (COG3708)
DDE_Tnp_IS240 (pfam13610), CcmA (COG4133), DUF3852 (pfam12963), Intron_maturas2 (pfam01348)