myRT

myRT report for GCA_000529355.1_IS25v1

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Seq: CBWG010000185.1 (11031 bp)
Overview 1 RT 1: 1037-4164 bp Neighborhood of RT #1 [1037, 4164] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 1037-1339 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1046-1298 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 046-1 298 bp Feature: gene Location: 1523-1768 bp Feature: gene Location: 1794-2726 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1896-2490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 896-2490 bp Feature: gene Location: 2728-3714 bp Feature: gene Location: 4015-4164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons

Seq: CBWG010000069.1 (51328 bp)
Overview 1 RT 1: 1-4831 bp Neighborhood of RT #1 [1, 4833] APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1-177 bp Feature: domain Description: APC_N_CC Location: 46-169 bp Feature: domain Description: APC_N_CC Location: 46-169 bp Feature: gene Location: 805-2409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1096-1687 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1096-1687 bp Feature: domain Description: TIR_2 Location: 2014-2347 bp Feature: domain Description: TIR_2 Location: 2 014-2 347 bp Feature: gene Location: 2767-3027 bp Feature: domain Description: PRK10597 Location: 2770-3010 bp Feature: domain Description: PRK10597 Location: 2 770-3010 bp Feature: gene Location: 3247-4833 bp Feature: domain Description: prfC Location: 3265-4831 bp Feature: domain Description: prfC Location: 32 65-4831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: CBWG010000140.1 (3362 bp)
Overview 1 RT 1: 3-3029 bp Neighborhood of RT #1 [3, 3029] PHA02517 RVT-GII GIIM RVT-GII PHA02517 Feature: gene Location: 3-341 bp Feature: domain Description: PHA02517 Location: 6-342 bp Feature: domain Description: PHA02517 Location: 6-3 42 bp Feature: gene Location: 458-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-980 bp Feature: domain Description: GIIM Note: maturase Location: 1055-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1055-1253 bp Feature: gene Location: 1540-1980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813 -1903 bp Feature: gene Location: 2572-3051 bp Feature: domain Description: PHA02517 Location: 2632-2986 bp Feature: domain Description: PHA02517 Location: 263 2-2986 bp Feature: gene Location: 2901-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CBWG010000050.1 (432456 bp)
Overview 1 RT 1: 430544-432208 bp Neighborhood of RT #1 [430544, 432453] DUF1016_N PHA02517 RVT-GII GIIM Feature: gene Location: 430544-430783 bp Feature: domain Description: DUF1016_N Location: 430601-430778 bp Feature: domain Description: DUF1016_N Location: 4 30601-4 30778 bp Feature: gene Location: 430823-431269 bp Feature: domain Description: PHA02517 Location: 430826-431267 bp Feature: domain Description: PHA02517 Location: 4 30826-4 31267 bp Feature: gene Location: 431386-432453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431404-431935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 314 04 -4 31935 bp Feature: domain Description: GIIM Note: maturase Location: 432010-432208 bp Feature: domain Description: GIIM Note: maturase Location: 4 32010-4 32208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)