myRT

myRT report for GCA_000530835.1_T22

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Seq: HF924767.1 Clostridium difficile T22 genomic scaffold, 1855_329, whole genome shotgun sequence (2685 bp)
Overview 1 RT 1: 722-2492 bp Neighborhood of RT #1 [722, 2521] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 722-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989-1 799 bp Feature: domain Description: Intron_maturas2 Location: 1865-2156 bp Feature: domain Description: Intron_maturas2 Location: 1 865-21 56 bp Feature: domain Description: HNHc Note: nucleases Location: 2342-2492 bp Feature: domain Description: HNHc Note: nucleases Location: 2342-2492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: HF924673.1 Clostridium difficile T22 genomic scaffold, 1855_235, whole genome shotgun sequence (12431 bp)
Overview 1 RT 1: 7577-12112 bp Neighborhood of RT #1 [7577, 12123] DUF3990 DUF3791 RVT-Retrons SmpB Feature: gene Location: 7577-8056 bp Feature: domain Description: DUF3990 Location: 7580-8036 bp Feature: domain Description: DUF3990 Location: 7580-8036 bp Feature: gene Location: 8056-8271 bp Feature: domain Description: DUF3791 Location: 8077-8260 bp Feature: domain Description: DUF3791 Location: 8077-82 60 bp Feature: gene Location: 8609-9748 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8765-9329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8765-932 9 bp Feature: gene Location: 9935-10816 bp Feature: gene Location: 11668-12123 bp Feature: domain Description: SmpB Location: 11680-12112 bp Feature: domain Description: SmpB Location: 11680-12 112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), DUF3990 (pfam13151), DUF3791 (pfam12668), RVT-Retrons