myRT

myRT report for GCA_000531095.1_IIL30

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Seq: HG799463.1 Gemmata sp. IIL30 genomic scaffold, scaffold00002, whole genome shotgun sequence (1263687 bp)
Overview 1 RT 1: 715779-721816 bp 2 RT 2: 1111337-1117034 bp Neighborhood of RT #1 [715779, 721816] PQQ_2 RVT-Retrons Neighborhood of RT #2 [1111337, 1117132] sigma70-ECF RVT-Retrons SPFH_eoslipins_u2 TPR TPR TPR TPR TPR Feature: gene Location: 715779-716333 bp Feature: gene Location: 716419-717378 bp Feature: domain Description: PQQ_2 Location: 716533-717304 bp Feature: domain Description: PQQ_2 Location: 71 6533-71 7304 bp Feature: gene Location: 717584-719170 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 718328-718943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 8328-71 8943 bp Feature: gene Location: 719620-720105 bp Feature: gene Location: 720122-721816 bp Feature: gene Location: 1111337-1111792 bp Feature: gene Location: 1111789-1112358 bp Feature: domain Description: sigma70-ECF Location: 1111852-1112329 bp Feature: domain Description: sigma70-ECF Location: 1 1 1 1 852-1 1 1 2329 bp Feature: gene Location: 1112705-1113502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1112774-1113302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 2774-1 1 1 3302 bp Feature: gene Location: 1113637-1114374 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1113697-1114321 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1 1 1 3697-1 1 1 4321 bp Feature: gene Location: 1114901-1117132 bp Feature: domain Description: TPR Location: 1115027-1115270 bp Feature: domain Description: TPR Location: 1 1 1 5027-1 1 1 5270 bp Feature: domain Description: TPR Location: 1115471-1115780 bp Feature: domain Description: TPR Location: 1 1 1 5471 -1 1 1 5780 bp Feature: domain Description: TPR Location: 1116140-1116347 bp Feature: domain Description: TPR Location: 1 1 1 61 40-1 1 1 6347 bp Feature: domain Description: TPR Location: 1116398-1116686 bp Feature: domain Description: TPR Location: 1 1 1 6398-1 1 1 6686 bp Feature: domain Description: TPR Location: 1116710-1117034 bp Feature: domain Description: TPR Location: 1 1 1 671 0-1 1 1 7034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PQQ_2 (pfam13360), RVT-Retrons, sigma70-ECF (TIGR02937), SPFH_eoslipins_u2 (cd13438), TPR (smart00028)

Seq: HG799466.1 Gemmata sp. IIL30 genomic scaffold, scaffold00005, whole genome shotgun sequence (930806 bp)
Overview 1 RT 1: 112604-120731 bp Neighborhood of RT #1 [112604, 120973] Trypsin_2 Trypsin_2 TPR TPR HEAT_2 HEAT HEAT_2 Aldo_ket_red RVT-Retrons FGE-sulfatase PQQ_3 PQQ_2 Feature: gene Location: 112604-114685 bp Feature: domain Description: Trypsin_2 Location: 112700-113204 bp Feature: domain Description: Trypsin_2 Location: 112 700-1132 04 bp Feature: domain Description: Trypsin_2 Location: 113387-113861 bp Feature: domain Description: Trypsin_2 Location: 113387-113861 bp Feature: domain Description: TPR Location: 114035-114158 bp Feature: domain Description: TPR Location: 114035-114158 bp Feature: domain Description: TPR Location: 114164-114392 bp Feature: domain Description: TPR Location: 114164-114392 bp Feature: gene Location: 114859-116943 bp Feature: domain Description: HEAT_2 Location: 114979-115237 bp Feature: domain Description: HEAT_2 Location: 114979-1152 37 bp Feature: domain Description: HEAT Location: 115258-115312 bp Feature: domain Description: HEAT Location: 1152 58-115312 bp Feature: domain Description: HEAT_2 Location: 115486-115675 bp Feature: domain Description: HEAT_2 Location: 115486-115675 bp Feature: domain Description: Aldo_ket_red Location: 116320-116878 bp Feature: domain Description: Aldo_ket_red Location: 11632 0-116878 bp Feature: gene Location: 117014-118561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117641-118265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117641-1182 65 bp Feature: gene Location: 118735-119535 bp Feature: domain Description: FGE-sulfatase Location: 118834-119506 bp Feature: domain Description: FGE-sulfatase Location: 118834-119506 bp Feature: gene Location: 119645-120973 bp Feature: domain Description: PQQ_3 Location: 119819-119891 bp Feature: domain Description: PQQ_3 Location: 119819-119891 bp Feature: domain Description: PQQ_2 Location: 119993-120731 bp Feature: domain Description: PQQ_2 Location: 119993-12 0731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), TPR (smart00028), HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248), RVT-Retrons, FGE-sulfatase (pfam03781), PQQ_3 (pfam13570), PQQ_2 (pfam13360)

Seq: HG799468.1 Gemmata sp. IIL30 genomic scaffold, scaffold00007, whole genome shotgun sequence (470105 bp)
Overview 1 RT 1: 429940-434445 bp 2 RT 2: 454507-459236 bp Neighborhood of RT #1 [429940, 434513] RVT-UG28 DUF4365 Neighborhood of RT #2 [454507, 459236] YhcG_C RVT-GII Intron_maturas2 HNHc DUF1016_N Feature: gene Location: 429940-430428 bp Feature: gene Location: 430915-431043 bp Feature: gene Location: 431158-432657 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 431440-432121 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 43 1440-43 2121 bp Feature: gene Location: 432698-433561 bp Feature: gene Location: 434094-434513 bp Feature: domain Description: DUF4365 Location: 434148-434445 bp Feature: domain Description: DUF43 65 Location: 43 4148-43 4445 bp Feature: gene Location: 454507-454833 bp Feature: domain Description: YhcG_C Location: 454516-454762 bp Feature: domain Description: YhcG_C Location: 454516-454762 bp Feature: gene Location: 454840-455016 bp Feature: gene Location: 455109-456944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455421-456216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455421-456216 bp Feature: domain Description: Intron_maturas2 Location: 456330-456561 bp Feature: domain Description: Intron_maturas2 Location: 4563 3 0-456561 bp Feature: domain Description: HNHc Note: nucleases Location: 456747-456900 bp Feature: domain Description: HNHc Note: nucleases Location: 456747-456900 bp Feature: gene Location: 457204-457968 bp Feature: domain Description: DUF1016_N Location: 457276-457681 bp Feature: domain Description: DUF1016_N Location: 457276-457681 bp Feature: gene Location: 458331-459236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, DUF4365 (pfam14280), YhcG_C, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1016_N (pfam17761)

Seq: HG799469.1 Gemmata sp. IIL30 genomic scaffold, scaffold00008, whole genome shotgun sequence (452140 bp)
Overview 1 RT 1: 184942-192941 bp Neighborhood of RT #1 [184942, 192941] HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons Feature: gene Location: 184942-188307 bp Feature: domain Description: HEAT_2 Location: 185515-185620 bp Feature: domain Description: HEAT_2 Location: 185515-185620 bp Feature: domain Description: HEAT_2 Location: 185809-186064 bp Feature: domain Description: HEAT_2 Location: 185809-186064 bp Feature: domain Description: HEAT_2 Location: 186562-186817 bp Feature: domain Description: HEAT_2 Location: 186562-186817 bp Feature: domain Description: HEAT_2 Location: 187000-187129 bp Feature: domain Description: HEAT_2 Location: 187000-187129 bp Feature: domain Description: HEAT_2 Location: 187717-187921 bp Feature: domain Description: HEAT_2 Location: 187717-187921 bp Feature: domain Description: HEAT_2 Location: 188047-188209 bp Feature: domain Description: HEAT_2 Location: 18804 7-188209 bp Feature: gene Location: 188554-190419 bp Feature: gene Location: 190546-191874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191011-191629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191011-191629 bp Feature: gene Location: 191874-192431 bp Feature: gene Location: 192660-192941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), RVT-Retrons