myRT

myRT report for GCA_000531435.1_PA38182

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Seq: HG530068.1 Pseudomonas aeruginosa PA38182, complete genome (7586152 bp)
Overview 1 RT 1: 655142-663426 bp 2 RT 2: 682971-690084 bp 3 RT 3: 859047-864735 bp 4 RT 4: 4600028-4604692 bp 5 RT 5: 6881099-6888421 bp Neighborhood of RT #1 [655142, 663488] COG3177 RVT_N RVT-GII GIIM HNH EAL PBP2_BvgS_HisK_like sensory_box sensory_box sensory_box sensory_box GGDEF YjcC Neighborhood of RT #2 [682971, 690098] LptD RVT-GII GIIM HNH RVT_N RVT-GII COG3178 Neighborhood of RT #3 [859047, 864735] HDOD YgfZ RVT_N RVT-GII YkfC HNH SdhE Neighborhood of RT #4 [4600028, 4604772] RVT-GII GIIM PRK09717 Neighborhood of RT #5 [6881099, 6888438] AAA_21 AAA_21 RVT-UG5 YeeA PRK12735 Feature: gene Location: 655142-656263 bp Ori: CDI88741.1 Feature: domain Description: COG3177 Location: 655160-656252 bp Feature: domain Description: COG31 77 Location: 6551 60-656252 bp Feature: gene Location: 656522-656683 bp Feature: gene Location: 656986-658671 bp Ori: CDI88743.1 Feature: domain Description: RVT_N Location: 657043-657283 bp Feature: domain Description: RVT_N Location: 657043-657283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657331-657967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657331 -657967 bp Feature: domain Description: GIIM Note: maturase Location: 658021-658252 bp Feature: domain Description: GIIM Note: maturase Location: 658021 -658252 bp Feature: domain Description: HNH Note: nucleases Location: 658504-658642 bp Feature: domain Description: HNH Note: nucleases Location: 658504-658642 bp Feature: gene Location: 659752-660342 bp Ori: CDI88744.1 Feature: domain Description: EAL Location: 659755-660277 bp Feature: domain Description: EAL Location: 659755-660277 bp Feature: gene Location: 660363-663488 bp Ori: CDI88745.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 660471-661128 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 660471 -661 1 28 bp Feature: domain Description: sensory_box Location: 661293-661659 bp Feature: domain Description: sensory_box Location: 661 293-661 659 bp Feature: domain Description: sensory_box Location: 661671-662031 bp Feature: domain Description: sensory_box Location: 661 671 -662031 bp Feature: domain Description: sensory_box Location: 662043-662409 bp Feature: domain Description: sensory_box Location: 662043-662409 bp Feature: domain Description: sensory_box Location: 662424-662775 bp Feature: domain Description: sensory_box Location: 662424-662775 bp Feature: domain Description: GGDEF Location: 662790-663261 bp Feature: domain Description: GGDEF Location: 662790-663261 bp Feature: domain Description: YjcC Location: 663291-663426 bp Feature: domain Description: YjcC Location: 663291 -663426 bp Feature: gene Location: 682971-684419 bp Ori: CDI88767.1 Gene: ostA Feature: domain Description: LptD Location: 682986-684405 bp Feature: domain Description: LptD Location: 682986-684405 bp Feature: gene Location: 684785-686062 bp Feature: gene Location: 686099-687085 bp Ori: CDI88769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686102-686354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6861 02-686354 bp Feature: domain Description: GIIM Note: maturase Location: 686405-686639 bp Feature: domain Description: GIIM Note: maturase Location: 686405-686639 bp Feature: domain Description: HNH Note: nucleases Location: 686891-687029 bp Feature: domain Description: HNH Note: nucleases Location: 686891 -687029 bp Feature: gene Location: 687028-687810 bp Ori: CDI88770.1 Feature: domain Description: RVT_N Location: 687085-687328 bp Feature: domain Description: RVT_N Location: 687085-687328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687373-687748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687373-687748 bp Feature: gene Location: 688651-688785 bp Feature: gene Location: 689082-690098 bp Ori: CDI88772.1 Feature: domain Description: COG3178 Location: 689085-690084 bp Feature: domain Description: COG31 78 Location: 689085-690084 bp Feature: gene Location: 859047-859883 bp Ori: CDI88853.1 Feature: domain Description: HDOD Location: 859050-859878 bp Feature: domain Description: HDOD Location: 859050-859878 bp Feature: gene Location: 859984-860928 bp Ori: CDI88854.1 Feature: domain Description: YgfZ Location: 859993-860893 bp Feature: domain Description: YgfZ Location: 859993-860893 bp Feature: gene Location: 862249-863970 bp Ori: CDI88855.1 Feature: domain Description: RVT_N Location: 862306-862543 bp Feature: domain Description: RVT_N Location: 862306-862543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862594-863230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862594-863230 bp Feature: domain Description: YkfC Location: 863428-863584 bp Feature: domain Description: YkfC Location: 863428-863584 bp Feature: domain Description: HNH Note: nucleases Location: 863767-863905 bp Feature: domain Description: HNH Note: nucleases Location: 863767-863905 bp Feature: gene Location: 864045-864299 bp Ori: CDI88856.1 Feature: domain Description: SdhE Location: 864051-864291 bp Feature: domain Description: SdhE Location: 864051 -864291 bp Feature: gene Location: 864283-864735 bp Feature: gene Location: 4600028-4600801 bp Feature: gene Location: 4601115-4601294 bp Feature: gene Location: 4602026-4603294 bp Ori: CDI92431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602239-4602896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602239-4602896 bp Feature: domain Description: GIIM Note: maturase Location: 4602974-4603196 bp Feature: domain Description: GIIM Note: maturase Location: 4602974-46031 96 bp Feature: gene Location: 4603787-4603954 bp Feature: gene Location: 4604251-4604772 bp Ori: CDI92433.1 Feature: domain Description: PRK09717 Location: 4604383-4604692 bp Feature: domain Description: PRK0971 7 Location: 4604383-4604692 bp Feature: gene Location: 6881099-6882238 bp Ori: CDI94622.1 Feature: domain Description: AAA_21 Location: 6881171-6881240 bp Feature: domain Description: AAA_21 Location: 6881 1 71 -6881 240 bp Feature: domain Description: AAA_21 Location: 6881714-6882044 bp Feature: domain Description: AAA_21 Location: 6881 71 4-6882044 bp Feature: gene Location: 6882238-6882795 bp Feature: gene Location: 6882792-6885812 bp Ori: CDI94624.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6883287-6883758 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6883287-6883758 bp Feature: gene Location: 6886616-6887566 bp Ori: CDI94625.1 Feature: domain Description: YeeA Location: 6886676-6887456 bp Feature: domain Description: YeeA Location: 6886676-6887456 bp Feature: gene Location: 6888106-6888438 bp Ori: CDI94626.1 Gene: tuf2_3 Feature: domain Description: PRK12735 Location: 6888193-6888421 bp Feature: domain Description: PRK1 2735 Location: 68881 93-6888421 bp Sorry, your browser does not 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Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), EAL (smart00052), PBP2_BvgS_HisK_like (cd01007), sensory_box (TIGR00229), GGDEF (TIGR00254), YjcC (COG4943)
LptD (COG1452), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), HDOD (pfam08668), YgfZ (COG0354), YkfC (COG3344), SdhE (COG2938), PRK09717 (stationary phase growth adaptation protein; Provisional), AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002)
PRK12735 (elongation factor Tu; Reviewed)