myRT

myRT report for GCA_000558345.1_MDR_VRFPA09

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Seq: JAAO01000010.1 Pseudomonas aeruginosa VRFPA09 ContigID10, whole genome shotgun sequence (6165520 bp)
Overview 1 RT 1: 753468-763776 bp 2 RT 2: 784498-788485 bp Neighborhood of RT #1 [753468, 763778] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [784498, 788499] RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 753468-754589 bp Feature: domain Description: COG3177 Location: 753486-754578 bp Feature: domain Description: COG31 77 Location: 753486-754578 bp Feature: gene Location: 754851-754988 bp Feature: gene Location: 755315-757000 bp Feature: RT Description: RVT_N Location: 755372-755612 bp Feature: RT Description: RVT_N Location: 755372-75561 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755660-756296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755660-756296 bp Feature: domain Description: GIIM Note: maturase Location: 756350-756581 bp Feature: domain Description: GIIM Note: maturase Location: 756350-756581 bp Feature: domain Description: HNH Note: nucleases Location: 756833-756971 bp Feature: domain Description: HNH Note: nucleases Location: 756833-756971 bp Feature: gene Location: 758081-761818 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 758189-758846 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7581 89-758846 bp Feature: domain Description: PRK09776 Location: 759059-759530 bp Feature: domain Description: PRK09776 Location: 759059-759530 bp Feature: domain Description: PAS Location: 759575-760112 bp Feature: domain Description: PAS Location: 759575-7601 1 2 bp Feature: domain Description: PRK10060 Location: 760121-761768 bp Feature: domain Description: PRK1 0060 Location: 7601 21 -761 768 bp Feature: gene Location: 761925-763778 bp Feature: domain Description: PRK05658 Location: 761937-763776 bp Feature: domain Description: PRK05658 Location: 761 937-763776 bp Feature: gene Location: 784498-786210 bp Feature: RT Description: RVT_N Location: 784555-784798 bp Feature: RT Description: RVT_N Location: 784555-784798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784843-785479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784843-785479 bp Feature: domain Description: YkfC Location: 785686-785839 bp Feature: domain Description: YkfC Location: 785686-785839 bp Feature: domain Description: HNH Note: nucleases Location: 786016-786154 bp Feature: domain Description: HNH Note: nucleases Location: 78601 6-7861 54 bp Feature: gene Location: 787052-787177 bp Feature: gene Location: 787483-788499 bp Feature: domain Description: COG3178 Location: 787486-788485 bp Feature: domain Description: COG31 78 Location: 787486-788485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: JAAO01000037.1 Pseudomonas aeruginosa VRFPA09 ContigID37, whole genome shotgun sequence (13320 bp)
Overview 1 RT 1: 2304-8472 bp Neighborhood of RT #1 [2304, 8472] IS5 RVT-GII GIIM IS5 Feature: gene Location: 2304-2714 bp Feature: domain Description: IS5 Location: 2310-2688 bp Feature: domain Description: IS5 Location: 2 310-2 688 bp Feature: gene Location: 3375-4031 bp Feature: gene Location: 5016-6284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5229-5886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 9-5886 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6186 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6186 bp Feature: gene Location: 6777-7316 bp Feature: domain Description: IS5 Location: 6966-7293 bp Feature: domain Description: IS5 Location: 6966-72 93 bp Feature: gene Location: 7960-8472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)