myRT

myRT report for GCA_000565285.1_pBF

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Seq: APVL01000005.1 Bacillus firmus DS1 scaffold5, whole genome shotgun sequence (274159 bp)
Overview 1 RT 1: 190740-199008 bp Neighborhood of RT #1 [190740, 199073] RVT-UG2 hsdR hsdR HsdM Feature: gene Location: 190740-191723 bp Feature: gene Location: 191800-192150 bp Feature: gene Location: 192609-194012 bp Ori: EWG11613.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 192885-193713 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 92885-1 9371 3 bp Feature: gene Location: 194319-197528 bp Ori: EWG11614.1 Gene: hsdR Feature: domain Description: hsdR Location: 194325-194742 bp Feature: domain Description: hsdR Location: 1 94325-1 94742 bp Feature: domain Description: hsdR Location: 194745-197520 bp Feature: domain Description: hsdR Location: 1 94745-1 97520 bp Feature: gene Location: 197649-199073 bp Ori: EWG11615.1 Feature: domain Description: HsdM Location: 197655-199008 bp Feature: domain Description: HsdM Location: 1 97655-1 99008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, hsdR (TIGR00348), HsdM (COG0286)

Seq: APVL01000018.1 Bacillus firmus DS1 scaffold18, whole genome shotgun sequence (70857 bp)
Overview 1 RT 1: 28747-38174 bp Neighborhood of RT #1 [28747, 38191] MoxR RVT-GII GIIM HNHc PIN_LabA RVT-GII HNHc DUF1292 Feature: gene Location: 28747-30201 bp Ori: EWG09344.1 Feature: domain Description: MoxR Location: 29389-29953 bp Feature: domain Description: MoxR Location: 2 9389-2 9953 bp Feature: gene Location: 30293-30682 bp Feature: gene Location: 30816-32699 bp Ori: EWG09346.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31113-31848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31113-31848 bp Feature: domain Description: GIIM Note: maturase Location: 31950-32151 bp Feature: domain Description: GIIM Note: maturase Location: 31950-32 151 bp Feature: domain Description: HNHc Note: nucleases Location: 32454-32622 bp Feature: domain Description: HNHc Note: nucleases Location: 32 454-32 62 2 bp Feature: gene Location: 33384-33932 bp Feature: gene Location: 33932-34549 bp Ori: EWG09348.1 Feature: domain Description: PIN_LabA Location: 34052-34460 bp Feature: domain Description: PIN_LabA Location: 34052 -34460 bp Feature: gene Location: 34573-36366 bp Ori: EWG09349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34867-35569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34867-35569 bp Feature: domain Description: HNHc Note: nucleases Location: 36100-36232 bp Feature: domain Description: HNHc Note: nucleases Location: 36100-362 32 bp Feature: gene Location: 37125-37577 bp Feature: gene Location: 37952-38191 bp Ori: EWG09351.1 Feature: domain Description: DUF1292 Location: 37988-38174 bp Feature: domain Description: DUF12 92 Location: 37988-38174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PIN_LabA (cd10911), DUF1292 (pfam06949)

Seq: APVL01000029.1 Bacillus firmus DS1 scaffold28, whole genome shotgun sequence (40333 bp)
Overview 1 RT 1: 22722-31535 bp 2 RT 2: 34559-39701 bp Neighborhood of RT #1 [22722, 31558] KOG0387 beta_clamp RVT-GII group_II_RT_mat HNHc COG4127 PRK08058 Neighborhood of RT #2 [34559, 39701] PRTRC_ThiF PRTRC_A RVT-GII HNHc Feature: gene Location: 22722-24965 bp Ori: EWG08798.1 Feature: domain Description: KOG0387 Location: 23169-24771 bp Feature: domain Description: KOG03 87 Location: 23 169-24771 bp Feature: gene Location: 24996-25895 bp Ori: EWG08799.1 Feature: domain Description: beta_clamp Location: 25020-25887 bp Feature: domain Description: beta_clamp Location: 25020-25887 bp Feature: gene Location: 26086-28047 bp Ori: EWG08800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26386-27109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 86-27109 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 27244-27484 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 27244-27484 bp Feature: domain Description: HNHc Note: nucleases Location: 27778-27916 bp Feature: domain Description: HNHc Note: nucleases Location: 27778-27916 bp Feature: gene Location: 29446-30045 bp Ori: EWG08801.1 Feature: domain Description: COG4127 Location: 29464-29980 bp Feature: domain Description: COG4127 Location: 29464-29980 bp Feature: gene Location: 30584-31558 bp Ori: EWG08802.1 Feature: domain Description: PRK08058 Location: 30590-31535 bp Feature: domain Description: PRK08058 Location: 3 0590-3 153 5 bp Feature: gene Location: 34559-35449 bp Ori: EWG08806.1 Feature: domain Description: PRTRC_ThiF Location: 34607-35396 bp Feature: domain Description: PRTRC_ThiF Location: 3 4607-3 53 96 bp Feature: gene Location: 35500-36150 bp Ori: EWG08807.1 Feature: domain Description: PRTRC_A Location: 35533-36046 bp Feature: domain Description: PRTRC_A Location: 3 553 3 -3 6046 bp Feature: gene Location: 36305-38089 bp Ori: EWG08808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36596-37298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6596-3 7298 bp Feature: domain Description: HNHc Note: nucleases Location: 37811-37961 bp Feature: domain Description: HNHc Note: nucleases Location: 3 7811-3 7961 bp Feature: gene Location: 38778-39104 bp Feature: gene Location: 39402-39701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), beta_clamp (cl29549), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), PRK08058 (DNA polymerase III subunit delta'; Validated), PRTRC_ThiF (TIGR03736), PRTRC_A (TIGR03735)

Seq: APVL01000031.1 Bacillus firmus DS1 scaffold30, whole genome shotgun sequence (31987 bp)
Overview 1 RT 1: 21718-27381 bp Neighborhood of RT #1 [21718, 27381] DEDD_Tnp_IS110 Transposase_20 5_3_exonuc_N RVT-GII HNHc PRK05755 Feature: gene Location: 21718-22995 bp Ori: EWG08722.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 21775-22255 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 21775-22255 bp Feature: domain Description: Transposase_20 Location: 22579-22831 bp Feature: domain Description: Transposase_20 Location: 22579-22831 bp Feature: gene Location: 23386-23802 bp Ori: EWG08723.1 Feature: domain Description: 5_3_exonuc_N Location: 23458-23788 bp Feature: domain Description: 5_3_exonuc_N Location: 234 58-23788 bp Feature: gene Location: 24524-26326 bp Ori: EWG08724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24818-25517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 818-25517 bp Feature: domain Description: HNHc Note: nucleases Location: 26075-26213 bp Feature: domain Description: HNHc Note: nucleases Location: 26075-26213 bp Feature: gene Location: 26524-27036 bp Ori: EWG08725.1 Feature: domain Description: PRK05755 Location: 26527-27019 bp Feature: domain Description: PRK05755 Location: 26527-27019 bp Feature: gene Location: 27175-27381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), 5_3_exonuc_N (pfam02739), RVT-GII, HNHc (smart00507), PRK05755 (DNA polymerase I; Provisional)