myRT

myRT report for GCA_000565345.1_costicolaLMG11651

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Seq: AQOF01000008.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig8, whole genome shotgun sequence (34032 bp)
Overview 1 RT 1: 520-5268 bp Neighborhood of RT #1 [520, 5282] emrE RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 520-852 bp Feature: domain Description: emrE Location: 523-850 bp Feature: domain Description: emrE Location: 523-850 bp Feature: gene Location: 1200-1580 bp Feature: gene Location: 1577-3340 bp Feature: RT Description: RVT_N Location: 1649-1892 bp Feature: RT Description: RVT_N Location: 1 649-1 892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937-2582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 937-2582 bp Feature: domain Description: GIIM Note: maturase Location: 2633-2867 bp Feature: domain Description: GIIM Note: maturase Location: 2633-2867 bp Feature: domain Description: HNHc Note: nucleases Location: 3083-3245 bp Feature: domain Description: HNHc Note: nucleases Location: 3083-3245 bp Feature: gene Location: 3499-3771 bp Feature: gene Location: 4434-5282 bp Feature: domain Description: groEL Location: 4437-5268 bp Feature: domain Description: groEL Location: 4437-5268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), emrE (PRK09541)

Seq: AQOF01000107.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig107, whole genome shotgun sequence (2464 bp)
Overview 1 RT 1: 2-2069 bp Neighborhood of RT #1 [2, 2164] RVT-GII GIIM Feature: gene Location: 2-247 bp Feature: gene Location: 450-659 bp Feature: gene Location: 860-2164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148-1790 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2069 bp Feature: domain Description: GIIM Note: maturase Location: 1862 -2 069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AQOF01000143.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig143, whole genome shotgun sequence (3189 bp)
Overview 1 RT 1: 256-3173 bp Neighborhood of RT #1 [256, 3187] PRK11360 TyrR TMAO_torS RVT-GII GIIM Feature: gene Location: 256-2127 bp Feature: domain Description: PRK11360 Location: 292-664 bp Feature: domain Description: PRK113 60 Location: 292-664 bp Feature: domain Description: TyrR Location: 670-835 bp Feature: domain Description: TyrR Location: 670-83 5 bp Feature: domain Description: TMAO_torS Location: 1024-1831 bp Feature: domain Description: TMAO_torS Location: 1024-183 1 bp Feature: gene Location: 2399-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-2921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405-2921 bp Feature: domain Description: GIIM Note: maturase Location: 2969-3173 bp Feature: domain Description: GIIM Note: maturase Location: 2969-3 173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11360 (two-component system sensor histidine kinase AtoS), TyrR (COG3283), TMAO_torS (TIGR02956)

Seq: AQOF01000168.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig168, whole genome shotgun sequence (3416 bp)
Overview 1 RT 1: 1-3304 bp Neighborhood of RT #1 [1, 3414] DDE_Tnp_1_assoc RVT-GII GIIM YhhI DDE_3 Feature: gene Location: 1-399 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 28-286 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 28-286 bp Feature: gene Location: 645-1970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924 -1581 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1878 bp Feature: gene Location: 2553-2858 bp Feature: domain Description: YhhI Location: 2577-2784 bp Feature: domain Description: YhhI Location: 2577-2784 bp Feature: gene Location: 2842-3414 bp Feature: domain Description: DDE_3 Location: 2878-3304 bp Feature: domain Description: DDE_3 Location: 2878-3304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: AQOF01000185.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig185, whole genome shotgun sequence (1062 bp)
Overview 1 RT 1: 128-1062 bp Neighborhood of RT #1 [128, 1061] RVT-GII Feature: gene Location: 128-283 bp Feature: gene Location: 453-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732-1062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AQOF01000189.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig189, whole genome shotgun sequence (1561 bp)
Overview 1 RT 1: 2-1137 bp Neighborhood of RT #1 [2, 1229] GIIM RVT-GII Feature: gene Location: 2-388 bp Feature: domain Description: GIIM Note: maturase Location: 107-332 bp Feature: domain Description: GIIM Note: maturase Location: 107-332 bp Feature: gene Location: 477-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756 -1137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII

Seq: AQOF01000202.1 Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 contig202, whole genome shotgun sequence (947 bp)
Overview 1 RT 1: 119-881 bp Neighborhood of RT #1 [119, 946] RVT-GII GIIM Feature: gene Location: 119-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-611 bp Feature: domain Description: GIIM Note: maturase Location: 656-881 bp Feature: domain Description: GIIM Note: maturase Location: 656-881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)