myRT

myRT report for GCA_000565945.1_ASM56594v1

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Seq: AZPC01000141.1 Shigella flexneri 2002007 2002007_0141, whole genome shotgun sequence (13136 bp)
Overview 1 RT 1: 7961-11134 bp Neighborhood of RT #1 [7961, 11134] PAP2_acid_phosphatase Tra5 RVT-GII Feature: gene Location: 7961-8710 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8036-8690 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8036-8690 bp Feature: gene Location: 9106-9306 bp Feature: domain Description: Tra5 Location: 9115-9289 bp Feature: domain Description: Tra5 Location: 91 1 5-9289 bp Feature: gene Location: 9319-10122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9619-10114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 961 9-1 01 1 4 bp Feature: gene Location: 10399-10539 bp Feature: gene Location: 10892-11134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII

Seq: AZPC01000171.1 Shigella flexneri 2002007 2002007_0171, whole genome shotgun sequence (38984 bp)
Overview 1 RT 1: 2046-10449 bp Neighborhood of RT #1 [2046, 10451] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2046-2471 bp Feature: domain Description: zinc_ribbon_11 Location: 2088-2406 bp Feature: domain Description: zinc_ribbon_11 Location: 2 088-2 406 bp Feature: gene Location: 3251-3490 bp Feature: domain Description: PHA02517 Location: 3254-3425 bp Feature: domain Description: PHA02 517 Location: 32 54-342 5 bp Feature: gene Location: 4082-5605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4355-5087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4355-5087 bp Feature: domain Description: GIIM Note: maturase Location: 5162-5360 bp Feature: domain Description: GIIM Note: maturase Location: 5162 -5360 bp Feature: gene Location: 5782-6168 bp Feature: domain Description: PHA02517 Location: 5785-6166 bp Feature: domain Description: PHA02 517 Location: 5785-6166 bp Feature: gene Location: 6333-10451 bp Feature: domain Description: ESPR Location: 6336-6405 bp Feature: domain Description: ESPR Location: 6336-6405 bp Feature: domain Description: Peptidase_S6 Location: 6486-8658 bp Feature: domain Description: Peptidase_S6 Location: 6486-8658 bp Feature: domain Description: autotrans_barl Location: 9222-10449 bp Feature: domain Description: autotrans_barl Location: 92 2 2 -10449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: AZPC01000206.1 Shigella flexneri 2002007 2002007_0206, whole genome shotgun sequence (2593 bp)
Overview 1 RT 1: 304-2592 bp Neighborhood of RT #1 [304, 2592] RVT-Retrons CspC Feature: gene Location: 304-459 bp Feature: gene Location: 549-731 bp Feature: gene Location: 753-1892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 897-1452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 897-1452 bp Feature: gene Location: 1897-2100 bp Feature: domain Description: CspC Location: 1900-2095 bp Feature: domain Description: CspC Location: 1900-2095 bp Feature: gene Location: 2299-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: AZPC01000215.1 Shigella flexneri 2002007 2002007_0215, whole genome shotgun sequence (22354 bp)
Overview 1 RT 1: 19638-22353 bp Neighborhood of RT #1 [19638, 22353] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 19638-20123 bp Feature: domain Description: COG3547 Location: 19656-20109 bp Feature: domain Description: COG354 7 Location: 19656-20109 bp Feature: gene Location: 20150-20296 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20162-20273 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20162-20273 bp Feature: gene Location: 20412-21629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20598-21252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20598-21252 bp Feature: domain Description: GIIM Note: maturase Location: 21330-21552 bp Feature: domain Description: GIIM Note: maturase Location: 21330-21552 bp Feature: gene Location: 21640-22023 bp Feature: gene Location: 22108-22353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)