myRT

myRT report for GCA_000566125.1_ASM56612v1

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Seq: AZPL01000060.1 Shigella flexneri 2001042 2001042_0060, whole genome shotgun sequence (1638 bp)
Overview 1 RT 1: 2-1609 bp Neighborhood of RT #1 [2, 1635] RVT-GII DDE_Tnp_IS66 Feature: gene Location: 2-895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04-758 bp Feature: gene Location: 990-1373 bp Feature: gene Location: 1456-1635 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1459-1609 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 459-1 609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: AZPL01000094.1 Shigella flexneri 2001042 2001042_0094, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AZPL01000258.1 Shigella flexneri 2001042 2001042_0258, whole genome shotgun sequence (1033 bp)
Overview 1 RT 1: 141-936 bp Neighborhood of RT #1 [141, 944] RVT-GII Feature: gene Location: 141-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-93 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AZPL01000294.1 Shigella flexneri 2001042 2001042_0294, whole genome shotgun sequence (12255 bp)
Overview 1 RT 1: 9155-12254 bp Neighborhood of RT #1 [9155, 12254] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 9155-9577 bp Feature: domain Description: DUF1380 Location: 9158-9452 bp Feature: domain Description: DUF1380 Location: 9158-94 52 bp Feature: gene Location: 9574-9765 bp Feature: gene Location: 10137-11804 bp Feature: RT Description: RVT_N Location: 10185-10422 bp Feature: RT Description: RVT_N Location: 10185-104 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10473-11115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 73-11115 bp Feature: domain Description: GIIM Note: maturase Location: 11166-11400 bp Feature: domain Description: GIIM Note: maturase Location: 11166-114 00 bp Feature: domain Description: HNHc Note: nucleases Location: 11610-11769 bp Feature: domain Description: HNHc Note: nucleases Location: 11610-11769 bp Feature: gene Location: 12084-12254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)