myRT

myRT report for GCA_000566185.1_ASM56618v1

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Seq: AZPO01000099.1 Shigella flexneri 2002028 2002028_0099, whole genome shotgun sequence (1638 bp)
Overview 1 RT 1: 2-1609 bp Neighborhood of RT #1 [2, 1635] RVT-GII DDE_Tnp_IS66 Feature: gene Location: 2-895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104-758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04-758 bp Feature: gene Location: 990-1373 bp Feature: gene Location: 1456-1635 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1459-1609 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 459-1 609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: AZPO01000220.1 Shigella flexneri 2002028 2002028_0220, whole genome shotgun sequence (1033 bp)
Overview 1 RT 1: 141-936 bp Neighborhood of RT #1 [141, 944] RVT-GII Feature: gene Location: 141-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AZPO01000289.1 Shigella flexneri 2002028 2002028_0289, whole genome shotgun sequence (8143 bp)
Overview 1 RT 1: 1791-4235 bp Neighborhood of RT #1 [1791, 4235] RVT-Retrons CspC Feature: gene Location: 1791-1946 bp Feature: gene Location: 2036-2218 bp Feature: gene Location: 2240-3379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2384-2939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 84-293 9 bp Feature: gene Location: 3384-3587 bp Feature: domain Description: CspC Location: 3387-3582 bp Feature: domain Description: CspC Location: 3 3 87-3 582 bp Feature: gene Location: 3786-4235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)

Seq: AZPO01000294.1 Shigella flexneri 2002028 2002028_0294, whole genome shotgun sequence (35706 bp)
Overview 1 RT 1: 717-7084 bp Neighborhood of RT #1 [717, 7086] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 717-2240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990-1722 bp Feature: domain Description: GIIM Note: maturase Location: 1797-1995 bp Feature: domain Description: GIIM Note: maturase Location: 1797-1995 bp Feature: gene Location: 2417-2803 bp Feature: domain Description: PHA02517 Location: 2420-2801 bp Feature: domain Description: PHA02517 Location: 24 20-2801 bp Feature: gene Location: 2968-7086 bp Feature: domain Description: ESPR Location: 2971-3040 bp Feature: domain Description: ESPR Location: 2971-304 0 bp Feature: domain Description: Peptidase_S6 Location: 3121-5293 bp Feature: domain Description: Peptidase_S6 Location: 3121-5293 bp Feature: domain Description: autotrans_barl Location: 5857-7084 bp Feature: domain Description: autotrans_barl Location: 5857-7084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)