myRT

myRT report for GCA_000566745.1_Kleb_pneu_UCI_43_V1

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Seq: KK036563.1 Klebsiella pneumoniae UCI 43 genomic scaffold adjbg-supercont1.1, whole genome shotgun sequence (5568539 bp)
Overview 1 RT 1: 585178-588585 bp 2 RT 2: 1029063-1034668 bp 3 RT 3: 1374603-1380021 bp 4 RT 4: 1550085-1556518 bp 5 RT 5: 2887755-2894238 bp 6 RT 6: 3342237-3345718 bp Neighborhood of RT #1 [585178, 588686] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [1029063, 1034694] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1374603, 1380023] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1550085, 1556520] PinE DDE_Tnp_1 RVT-GII PRK10276 umuC Neighborhood of RT #5 [2887755, 2894240] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #6 [3342237, 3345718] Terminase_2 RVT-GII Feature: gene Location: 585178-585909 bp Feature: domain Description: Laminin_G_3 Location: 585499-585853 bp Feature: domain Description: Laminin_G_3 Location: 585499-585853 bp Feature: gene Location: 585906-586115 bp Feature: gene Location: 586565-588052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586970-587660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586970-587660 bp Feature: gene Location: 588130-588369 bp Feature: gene Location: 588369-588686 bp Feature: domain Description: PRK10276 Location: 588375-588489 bp Feature: domain Description: PRK1 0276 Location: 588375-588489 bp Feature: domain Description: PRK10276 Location: 588516-588585 bp Feature: domain Description: PRK1 0276 Location: 58851 6-588585 bp Feature: gene Location: 1029063-1029626 bp Feature: domain Description: YbjK Location: 1029069-1029606 bp Feature: domain Description: YbjK Location: 1 029069-1 029606 bp Feature: gene Location: 1029749-1030801 bp Feature: domain Description: int Location: 1029752-1030751 bp Feature: domain Description: int Location: 1 029752-1 030751 bp Feature: gene Location: 1031217-1032704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1031622-1032312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 031 622-1 03231 2 bp Feature: gene Location: 1032803-1033747 bp Feature: gene Location: 1033759-1034694 bp Feature: domain Description: Phage_CI_repr Location: 1033843-1034026 bp Feature: domain Description: Phage_CI_repr Location: 1 033843-1 034026 bp Feature: domain Description: Phage_CI_repr Location: 1034155-1034347 bp Feature: domain Description: Phage_CI_repr Location: 1 0341 55-1 034347 bp Feature: domain Description: Phage_CI_C Location: 1034374-1034668 bp Feature: domain Description: Phage_CI_C Location: 1 034374-1 034668 bp Feature: gene Location: 1374603-1375742 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1374786-1375686 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 374786-1 375686 bp Feature: gene Location: 1375913-1376155 bp Feature: domain Description: DinI Location: 1375964-1376144 bp Feature: domain Description: DinI Location: 1 375964-1 3761 44 bp Feature: gene Location: 1376770-1378257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377175-1377865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3771 75-1 377865 bp Feature: gene Location: 1378336-1378755 bp Feature: domain Description: PRK10276 Location: 1378339-1378750 bp Feature: domain Description: PRK1 0276 Location: 1 378339-1 378750 bp Feature: gene Location: 1378758-1380023 bp Feature: domain Description: umuC Location: 1378761-1380021 bp Feature: domain Description: umuC Location: 1 378761 -1 380021 bp Feature: gene Location: 1550085-1550534 bp Feature: domain Description: PinE Location: 1550094-1550526 bp Feature: domain Description: PinE Location: 1 550094-1 550526 bp Feature: gene Location: 1550861-1552069 bp Feature: domain Description: DDE_Tnp_1 Location: 1551134-1551842 bp Feature: domain Description: DDE_Tnp_1 Location: 1 551 1 34-1 551 842 bp Feature: gene Location: 1553267-1554754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553672-1554362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 553672-1 554362 bp Feature: gene Location: 1554747-1555253 bp Feature: domain Description: PRK10276 Location: 1554837-1555248 bp Feature: domain Description: PRK1 0276 Location: 1 554837-1 555248 bp Feature: gene Location: 1555255-1556520 bp Feature: domain Description: umuC Location: 1555258-1556518 bp Feature: domain Description: umuC Location: 1 555258-1 55651 8 bp Feature: gene Location: 2887755-2888813 bp Feature: domain Description: YccC Location: 2887761-2888799 bp Feature: domain Description: YccC Location: 2887761 -2888799 bp Feature: gene Location: 2888912-2889385 bp Feature: domain Description: PRK10016 Location: 2888915-2889374 bp Feature: domain Description: PRK1 001 6 Location: 288891 5-2889374 bp Feature: gene Location: 2889467-2890954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889872-2890562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889872-2890562 bp Feature: gene Location: 2891472-2892635 bp Feature: domain Description: dacD Location: 2891475-2892630 bp Feature: domain Description: dacD Location: 2891 475-2892630 bp Feature: gene Location: 2892816-2894240 bp Feature: domain Description: SbcB Location: 2892822-2894238 bp Feature: domain Description: SbcB Location: 2892822-2894238 bp Feature: gene Location: 3342237-3342821 bp Feature: domain Description: Terminase_2 Location: 3342282-3342747 bp Feature: domain Description: Terminase_2 Location: 3342282-3342747 bp Feature: gene Location: 3342899-3343156 bp Feature: gene Location: 3343557-3345044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343962-3344652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343962-3344652 bp Feature: gene Location: 3345141-3345479 bp Feature: gene Location: 3345479-3345718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
PinE (COG1961), DDE_Tnp_1 (pfam01609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592)