myRT

myRT report for GCA_000566845.1_Kleb_pneu_UCI_34_V1

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Seq: KK036611.1 Klebsiella pneumoniae UCI 34 genomic scaffold adjcB-supercont1.3, whole genome shotgun sequence (300666 bp)
Overview 1 RT 1: 45412-50887 bp 2 RT 2: 157755-163861 bp Neighborhood of RT #1 [45412, 50892] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Neighborhood of RT #2 [157755, 164394] arsen_driv_ArsA COG3547 RVT-GII GIIM PHA02517 DDE_Tnp_1_5 Feature: gene Location: 45412-46083 bp Feature: domain Description: Plasmid_stab_B Location: 45427-45634 bp Feature: domain Description: Plasmid_stab_B Location: 45427-45634 bp Feature: domain Description: Plasmid_stab_B Location: 45739-45946 bp Feature: domain Description: Plasmid_stab_B Location: 45739-45946 bp Feature: gene Location: 46086-47057 bp Feature: domain Description: StbA Location: 46089-47034 bp Feature: domain Description: StbA Location: 46089-47034 bp Feature: gene Location: 47306-48715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47633-48323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47633-48323 bp Feature: gene Location: 49196-49621 bp Feature: domain Description: PRK10276 Location: 49199-49607 bp Feature: domain Description: PRK1 0276 Location: 491 99-49607 bp Feature: gene Location: 49621-50892 bp Feature: domain Description: umuC Location: 49624-50887 bp Feature: domain Description: umuC Location: 49624-50887 bp Feature: gene Location: 157755-158720 bp Feature: domain Description: arsen_driv_ArsA Location: 157758-158679 bp Feature: domain Description: arsen_driv_ArsA Location: 1 57758-1 58679 bp Feature: gene Location: 159072-160148 bp Feature: domain Description: COG3547 Location: 159111-160032 bp Feature: domain Description: COG3547 Location: 1 591 1 1 -1 60032 bp Feature: gene Location: 160690-162213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160963-161695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60963-1 61 695 bp Feature: domain Description: GIIM Note: maturase Location: 161770-161968 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 770-1 61 968 bp Feature: gene Location: 162805-163044 bp Feature: domain Description: PHA02517 Location: 162808-162979 bp Feature: domain Description: PHA0251 7 Location: 1 62808-1 62979 bp Feature: gene Location: 163471-164394 bp Feature: domain Description: DDE_Tnp_1_5 Location: 163528-163861 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 63528-1 63861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), arsen_driv_ArsA (TIGR04291), COG3547 (Transposase ), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1_5 (pfam13737)

Seq: KK036610.1 Klebsiella pneumoniae UCI 34 genomic scaffold adjcB-supercont1.2, whole genome shotgun sequence (2034070 bp)
Overview 1 RT 1: 55795-61936 bp 2 RT 2: 74216-78949 bp 3 RT 3: 1867464-1875248 bp Neighborhood of RT #1 [55795, 62016] DUF5051 RVT-GII Phage_GPA dam Neighborhood of RT #2 [74216, 78954] RVT-Retrons InsE Neighborhood of RT #3 [1867464, 1875256] PRK09692 RVT-GII SIR2_2 TPR Psu Feature: gene Location: 55795-56340 bp Feature: domain Description: DUF5051 Location: 55801-56317 bp Feature: domain Description: DUF5051 Location: 55801-56317 bp Feature: gene Location: 56497-56685 bp Feature: gene Location: 56792-58279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57197-57887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57197-57887 bp Feature: gene Location: 58757-61165 bp Feature: domain Description: Phage_GPA Location: 59336-60302 bp Feature: domain Description: Phage_GPA Location: 59336-60302 bp Feature: gene Location: 61156-62016 bp Feature: domain Description: dam Location: 61159-61936 bp Feature: domain Description: dam Location: 61159-61936 bp Feature: gene Location: 74216-74410 bp Feature: gene Location: 75341-76636 bp Feature: gene Location: 76825-77988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77050-77725 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77050-7772 5 bp Feature: gene Location: 78135-78560 bp Feature: gene Location: 78655-78954 bp Feature: domain Description: InsE Location: 78685-78949 bp Feature: domain Description: InsE Location: 78685-78949 bp Feature: gene Location: 1867464-1867562 bp Feature: gene Location: 1868068-1869339 bp Feature: domain Description: PRK09692 Location: 1868077-1869292 bp Feature: domain Description: PRK09692 Location: 1868077-18692 92 bp Feature: gene Location: 1870046-1871533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870451-1871141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870451-1871141 bp Feature: gene Location: 1871479-1874478 bp Feature: domain Description: SIR2_2 Location: 1871674-1872106 bp Feature: domain Description: SIR2 _2 Location: 1871674-1872 106 bp Feature: domain Description: TPR Location: 1873846-1874092 bp Feature: domain Description: TPR Location: 1873846-1874092 bp Feature: gene Location: 1874690-1875256 bp Feature: domain Description: Psu Location: 1874708-1875248 bp Feature: domain Description: Psu Location: 1874708-18752 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5051 (pfam16473), RVT-GII, Phage_GPA (pfam05840), dam (TIGR00571), RVT-Retrons, InsE (COG2963), PRK09692 (Integrase; provisional), SIR2_2 (pfam13289), TPR (smart00028), Psu (pfam07455)

Seq: KK036609.1 Klebsiella pneumoniae UCI 34 genomic scaffold adjcB-supercont1.1, whole genome shotgun sequence (3232403 bp)
Overview 1 RT 1: 501918-508387 bp 2 RT 2: 1824814-1829593 bp 3 RT 3: 1968914-1973434 bp 4 RT 4: 2933514-2939619 bp Neighborhood of RT #1 [501918, 508401] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [1824814, 1829604] umuC PRK10276 RVT-GII DinI Neighborhood of RT #3 [1968914, 1973436] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #4 [2933514, 2939621] PHA02517 COG3547 RVT-GII GIIM InsE ompX Feature: gene Location: 501918-503342 bp Feature: domain Description: SbcB Location: 501924-503340 bp Feature: domain Description: SbcB Location: 501924-503 3 40 bp Feature: gene Location: 503523-504686 bp Feature: domain Description: dacD Location: 503526-504681 bp Feature: domain Description: dacD Location: 503 526-504681 bp Feature: gene Location: 505202-506689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505607-506297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505607-506297 bp Feature: gene Location: 506771-507244 bp Feature: domain Description: PRK10016 Location: 506774-507233 bp Feature: domain Description: PRK10016 Location: 506774-50723 3 bp Feature: gene Location: 507343-508401 bp Feature: domain Description: YccC Location: 507349-508387 bp Feature: domain Description: YccC Location: 5073 49-5083 87 bp Feature: gene Location: 1824814-1826079 bp Feature: domain Description: umuC Location: 1824817-1826077 bp Feature: domain Description: umuC Location: 1824817-1826077 bp Feature: gene Location: 1826082-1826501 bp Feature: domain Description: PRK10276 Location: 1826085-1826496 bp Feature: domain Description: PRK10276 Location: 1826085-1826496 bp Feature: gene Location: 1826580-1828067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1826985-1827675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1826985-1827675 bp Feature: gene Location: 1828811-1828877 bp Feature: gene Location: 1829362-1829604 bp Feature: domain Description: DinI Location: 1829413-1829593 bp Feature: domain Description: DinI Location: 1829413 -1829593 bp Feature: gene Location: 1968914-1969474 bp Feature: domain Description: PRK10598 Location: 1968917-1969472 bp Feature: domain Description: PRK10598 Location: 1968917-1969472 bp Feature: gene Location: 1969600-1970646 bp Feature: domain Description: PRK05451 Location: 1969615-1970641 bp Feature: domain Description: PRK05451 Location: 1969615-1970641 bp Feature: gene Location: 1970739-1972226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971144-1971834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971144-197183 4 bp Feature: gene Location: 1972628-1972879 bp Feature: domain Description: PRK10597 Location: 1972631-1972868 bp Feature: domain Description: PRK10597 Location: 197263 1-1972868 bp Feature: gene Location: 1973182-1973436 bp Feature: domain Description: bssS Location: 1973185-1973434 bp Feature: domain Description: bssS Location: 1973 185-1973 43 4 bp Feature: gene Location: 2933514-2933720 bp Feature: domain Description: PHA02517 Location: 2933517-2933691 bp Feature: domain Description: PHA02517 Location: 293 3 517-293 3 691 bp Feature: gene Location: 2933839-2934915 bp Feature: domain Description: COG3547 Location: 2933878-2934799 bp Feature: domain Description: COG3 547 Location: 293 3 878-293 4799 bp Feature: gene Location: 2935457-2936980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2935730-2936462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 573 0-293 6462 bp Feature: domain Description: GIIM Note: maturase Location: 2936537-2936735 bp Feature: domain Description: GIIM Note: maturase Location: 293 653 7-293 673 5 bp Feature: gene Location: 2938013-2938324 bp Feature: domain Description: InsE Location: 2938016-2938307 bp Feature: domain Description: InsE Location: 293 8016-293 83 07 bp Feature: gene Location: 2939085-2939621 bp Feature: domain Description: ompX Location: 2939112-2939619 bp Feature: domain Description: ompX Location: 293 9112-293 9619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional)
PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), GIIM (pfam08388), InsE (COG2963), ompX (PRK09408)