myRT

myRT report for GCA_000567245.1_Kleb_pneu_BIDMC_34_V1

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Seq: KK036746.1 Klebsiella pneumoniae BIDMC 34 genomic scaffold adjbC-supercont1.3, whole genome shotgun sequence (57236 bp)
Overview 1 RT 1: 50645-55087 bp Neighborhood of RT #1 [50645, 55089] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 50645-51916 bp Feature: domain Description: umuC Location: 50648-51908 bp Feature: domain Description: umuC Location: 50648-51 908 bp Feature: gene Location: 51916-52347 bp Feature: domain Description: PRK10276 Location: 51967-52330 bp Feature: domain Description: PRK1 0276 Location: 51 967-52330 bp Feature: gene Location: 52753-54240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53158-53848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531 58-53848 bp Feature: gene Location: 54392-54667 bp Feature: domain Description: InsA Location: 54398-54659 bp Feature: domain Description: InsA Location: 54398-54659 bp Feature: gene Location: 54712-55089 bp Feature: domain Description: DDE_Tnp_IS1 Location: 54715-55087 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5471 5-55087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: KK036744.1 Klebsiella pneumoniae BIDMC 34 genomic scaffold adjbC-supercont1.1, whole genome shotgun sequence (5393603 bp)
Overview 1 RT 1: 166336-171754 bp 2 RT 2: 352000-357865 bp 3 RT 3: 1592756-1599239 bp 4 RT 4: 4729881-4733288 bp 5 RT 5: 5172840-5178445 bp Neighborhood of RT #1 [166336, 171756] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [352000, 357867] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #3 [1592756, 1599241] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [4729881, 4733389] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #5 [5172840, 5178471] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Feature: gene Location: 166336-167475 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 166519-167419 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 166519-167419 bp Feature: gene Location: 167646-167888 bp Feature: domain Description: DinI Location: 167697-167877 bp Feature: domain Description: DinI Location: 167697-167877 bp Feature: gene Location: 168503-169990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168908-169598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168908-169598 bp Feature: gene Location: 170069-170488 bp Feature: domain Description: PRK10276 Location: 170072-170483 bp Feature: domain Description: PRK102 76 Location: 170072 -170483 bp Feature: gene Location: 170491-171756 bp Feature: domain Description: umuC Location: 170494-171754 bp Feature: domain Description: umuC Location: 170494-171754 bp Feature: gene Location: 352000-352704 bp Feature: domain Description: Rve Location: 352003-352648 bp Feature: domain Description: Rve Location: 352 003-352 648 bp Feature: gene Location: 352770-353219 bp Feature: domain Description: PinE Location: 352779-353211 bp Feature: domain Description: PinE Location: 352 779-3532 11 bp Feature: gene Location: 354614-356101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355019-355709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355019-355709 bp Feature: gene Location: 356094-356600 bp Feature: domain Description: PRK10276 Location: 356184-356595 bp Feature: domain Description: PRK102 76 Location: 356184-356595 bp Feature: gene Location: 356602-357867 bp Feature: domain Description: umuC Location: 356605-357865 bp Feature: domain Description: umuC Location: 356605-357865 bp Feature: gene Location: 1592756-1593814 bp Feature: domain Description: YccC Location: 1592762-1593800 bp Feature: domain Description: YccC Location: 1592 762 -1593800 bp Feature: gene Location: 1593913-1594386 bp Feature: domain Description: PRK10016 Location: 1593916-1594375 bp Feature: domain Description: PRK10016 Location: 1593916-1594375 bp Feature: gene Location: 1594468-1595955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1594873-1595563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1594873-1595563 bp Feature: gene Location: 1596473-1597636 bp Feature: domain Description: dacD Location: 1596476-1597631 bp Feature: domain Description: dacD Location: 1596476-1597631 bp Feature: gene Location: 1597817-1599241 bp Feature: domain Description: SbcB Location: 1597823-1599239 bp Feature: domain Description: SbcB Location: 159782 3-15992 39 bp Feature: gene Location: 4729881-4730612 bp Feature: domain Description: Laminin_G_3 Location: 4730202-4730556 bp Feature: domain Description: Laminin_G_3 Location: 47302 02 -4730556 bp Feature: gene Location: 4730609-4730818 bp Feature: gene Location: 4731268-4732755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4731673-4732363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4731673-4732 363 bp Feature: gene Location: 4732833-4733072 bp Feature: gene Location: 4733072-4733389 bp Feature: domain Description: PRK10276 Location: 4733078-4733192 bp Feature: domain Description: PRK102 76 Location: 4733078-4733192 bp Feature: domain Description: PRK10276 Location: 4733219-4733288 bp Feature: domain Description: PRK102 76 Location: 47332 19-47332 88 bp Feature: gene Location: 5172840-5173403 bp Feature: domain Description: YbjK Location: 5172846-5173383 bp Feature: domain Description: YbjK Location: 5172 846-5173383 bp Feature: gene Location: 5173526-5174578 bp Feature: domain Description: int Location: 5173529-5174528 bp Feature: domain Description: int Location: 517352 9-517452 8 bp Feature: gene Location: 5174994-5176481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5175399-5176089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5175399-5176089 bp Feature: gene Location: 5176580-5177524 bp Feature: gene Location: 5177536-5178471 bp Feature: domain Description: Phage_CI_repr Location: 5177620-5177803 bp Feature: domain Description: Phage_CI_repr Location: 517762 0-5177803 bp Feature: domain Description: Phage_CI_repr Location: 5177932-5178124 bp Feature: domain Description: Phage_CI_repr Location: 5177932 -517812 4 bp Feature: domain Description: Phage_CI_C Location: 5178151-5178445 bp Feature: domain Description: Phage_CI_C Location: 5178151-5178445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397)
SbcB (COG2925), Laminin_G_3 (pfam13385), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)

Seq: KK036745.1 Klebsiella pneumoniae BIDMC 34 genomic scaffold adjbC-supercont1.2, whole genome shotgun sequence (208287 bp)
Overview 1 RT 1: 110569-115560 bp Neighborhood of RT #1 [110569, 115565] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 110569-110994 bp Feature: domain Description: Antirestrict Location: 110704-110992 bp Feature: domain Description: Antirestrict Location: 110704-110992 bp Feature: gene Location: 111515-111745 bp Feature: gene Location: 111979-113466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112384-113074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123 84-113 074 bp Feature: gene Location: 113869-114294 bp Feature: domain Description: PRK10276 Location: 113872-114280 bp Feature: domain Description: PRK10276 Location: 113 872-114280 bp Feature: gene Location: 114294-115565 bp Feature: domain Description: umuC Location: 114297-115560 bp Feature: domain Description: umuC Location: 114297-115560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)