myRT

myRT report for GCA_000567325.1_Kleb_pneu_BIDMC_14_V2

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Seq: KK036792.1 Klebsiella pneumoniae BIDMC 14 genomic scaffold adkge-supercont2.3, whole genome shotgun sequence (208626 bp)
Overview 1 RT 1: 2171-4442 bp Neighborhood of RT #1 [2171, 4834] umuC PRK10276 RVT-GII Feature: gene Location: 2171-3442 bp Feature: domain Description: umuC Location: 2174-3434 bp Feature: domain Description: umuC Location: 21 74-3434 bp Feature: gene Location: 3442-3864 bp Feature: domain Description: PRK10276 Location: 3448-3850 bp Feature: domain Description: PRK1 0276 Location: 3448-3850 bp Feature: gene Location: 3950-4834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3953-4442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3953-4442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: KK036789.1 Klebsiella pneumoniae BIDMC 14 genomic scaffold adkge-supercont2.1, whole genome shotgun sequence (3144673 bp)
Overview 1 RT 1: 444560-451031 bp 2 RT 2: 1690704-1696515 bp 3 RT 3: 1868767-1874131 bp 4 RT 4: 2211070-2216681 bp 5 RT 5: 2557811-2561263 bp Neighborhood of RT #1 [444560, 451045] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [1690704, 1696571] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #3 [1868767, 1874187] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #4 [2211070, 2216701] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #5 [2557811, 2561319] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 444560-445984 bp Feature: domain Description: SbcB Location: 444566-445982 bp Feature: domain Description: SbcB Location: 444566-445982 bp Feature: gene Location: 446165-447328 bp Feature: domain Description: dacD Location: 446168-447323 bp Feature: domain Description: dacD Location: 446168-44732 3 bp Feature: gene Location: 447846-449333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448251-448941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482 51-448941 bp Feature: gene Location: 449415-449888 bp Feature: domain Description: PRK10016 Location: 449418-449877 bp Feature: domain Description: PRK10016 Location: 449418-449877 bp Feature: gene Location: 449987-451045 bp Feature: domain Description: YccC Location: 449993-451031 bp Feature: domain Description: YccC Location: 449993-451031 bp Feature: gene Location: 1690704-1691969 bp Feature: domain Description: umuC Location: 1690707-1691967 bp Feature: domain Description: umuC Location: 1690707-1691967 bp Feature: gene Location: 1691971-1692477 bp Feature: domain Description: PRK10276 Location: 1692061-1692472 bp Feature: domain Description: PRK102 76 Location: 1692 061-1692 472 bp Feature: gene Location: 1692470-1693957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692875-1693565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692 875-1693565 bp Feature: gene Location: 1695352-1695801 bp Feature: domain Description: PinE Location: 1695361-1695793 bp Feature: domain Description: PinE Location: 1695361-1695793 bp Feature: gene Location: 1695867-1696571 bp Feature: domain Description: Rve Location: 1695870-1696515 bp Feature: domain Description: Rve Location: 1695870-1696515 bp Feature: gene Location: 1868767-1870032 bp Feature: domain Description: umuC Location: 1868770-1870030 bp Feature: domain Description: umuC Location: 1868770-1870030 bp Feature: gene Location: 1870035-1870454 bp Feature: domain Description: PRK10276 Location: 1870038-1870449 bp Feature: domain Description: PRK102 76 Location: 1870038-1870449 bp Feature: gene Location: 1870533-1872020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870938-1871628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870938-187162 8 bp Feature: gene Location: 1872635-1872877 bp Feature: domain Description: DinI Location: 1872686-1872866 bp Feature: domain Description: DinI Location: 1872 686-1872 866 bp Feature: gene Location: 1873048-1874187 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1873231-1874131 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 18732 31-1874131 bp Feature: gene Location: 2211070-2212005 bp Feature: domain Description: Phage_CI_repr Location: 2211154-2211337 bp Feature: domain Description: Phage_CI_repr Location: 2 2 11154-2 2 11337 bp Feature: domain Description: Phage_CI_repr Location: 2211466-2211658 bp Feature: domain Description: Phage_CI_repr Location: 2 2 11466-2 2 11658 bp Feature: domain Description: Phage_CI_C Location: 2211685-2211979 bp Feature: domain Description: Phage_CI_C Location: 2 2 11685-2 2 11979 bp Feature: gene Location: 2212017-2212961 bp Feature: gene Location: 2213060-2214547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213465-2214155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 13465-2 2 14155 bp Feature: gene Location: 2214963-2216015 bp Feature: domain Description: int Location: 2214966-2215965 bp Feature: domain Description: int Location: 2 2 14966-2 2 15965 bp Feature: gene Location: 2216138-2216701 bp Feature: domain Description: YbjK Location: 2216144-2216681 bp Feature: domain Description: YbjK Location: 2 2 16144-2 2 16681 bp Feature: gene Location: 2557811-2558128 bp Feature: domain Description: PRK10276 Location: 2557817-2557931 bp Feature: domain Description: PRK102 76 Location: 2 557817-2 557931 bp Feature: domain Description: PRK10276 Location: 2557958-2558027 bp Feature: domain Description: PRK102 76 Location: 2 557958-2 55802 7 bp Feature: gene Location: 2558128-2558367 bp Feature: gene Location: 2558445-2559932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2558850-2559540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 558850-2 559540 bp Feature: gene Location: 2560382-2560591 bp Feature: gene Location: 2560588-2561319 bp Feature: domain Description: Laminin_G_3 Location: 2560909-2561263 bp Feature: domain Description: Laminin_G_3 Location: 2 560909-2 5612 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), DinI (pfam06183)
GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), Laminin_G_3 (pfam13385)

Seq: KK036793.1 Klebsiella pneumoniae BIDMC 14 genomic scaffold adkge-supercont2.4, whole genome shotgun sequence (188830 bp)
Overview 1 RT 1: 185344-188538 bp Neighborhood of RT #1 [185344, 188830] umuC PRK10276 RVT-GII Feature: gene Location: 185344-186615 bp Feature: domain Description: umuC Location: 185347-186610 bp Feature: domain Description: umuC Location: 1853 47-186610 bp Feature: gene Location: 186615-187040 bp Feature: domain Description: PRK10276 Location: 186618-187026 bp Feature: domain Description: PRK10276 Location: 186618-187026 bp Feature: gene Location: 187443-188830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187848-188538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187848-18853 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: KK036791.1 Klebsiella pneumoniae BIDMC 14 genomic scaffold adkge-supercont2.2, whole genome shotgun sequence (2123288 bp)
Overview 1 RT 1: 92176-97837 bp Neighborhood of RT #1 [92176, 97914] DinI RVT-GII Phage_GPA dam Feature: gene Location: 92176-92409 bp Feature: domain Description: DinI Location: 92221-92404 bp Feature: domain Description: DinI Location: 92221-924 04 bp Feature: gene Location: 92421-92609 bp Feature: gene Location: 92717-94204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93122-93812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93122-93812 bp Feature: gene Location: 94682-97066 bp Feature: domain Description: Phage_GPA Location: 95246-96212 bp Feature: domain Description: Phage_GPA Location: 9524 6-96212 bp Feature: gene Location: 97063-97914 bp Feature: domain Description: dam Location: 97066-97837 bp Feature: domain Description: dam Location: 97066-97837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, Phage_GPA (pfam05840), dam (TIGR00571)