myRT

myRT report for GCA_000567505.1_Kleb_pneu_BIDMC_1_V2

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Seq: KK036894.1 Klebsiella pneumoniae BIDMC 1 genomic scaffold adjGv-supercont2.1, whole genome shotgun sequence (4093091 bp)
Overview 1 RT 1: 1352825-1359296 bp 2 RT 2: 2719590-2724954 bp 3 RT 3: 3061679-3067290 bp 4 RT 4: 3505452-3508904 bp Neighborhood of RT #1 [1352825, 1359310] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [2719590, 2725010] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #3 [3061679, 3067310] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #4 [3505452, 3508960] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 1352825-1354249 bp Feature: domain Description: SbcB Location: 1352831-1354247 bp Feature: domain Description: SbcB Location: 1 352831 -1 354247 bp Feature: gene Location: 1354430-1355593 bp Feature: domain Description: dacD Location: 1354433-1355588 bp Feature: domain Description: dacD Location: 1 354433-1 355588 bp Feature: gene Location: 1356114-1357598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356516-1357206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35651 6-1 357206 bp Feature: gene Location: 1357680-1358153 bp Feature: domain Description: PRK10016 Location: 1357683-1358142 bp Feature: domain Description: PRK1 001 6 Location: 1 357683-1 3581 42 bp Feature: gene Location: 1358252-1359310 bp Feature: domain Description: YccC Location: 1358258-1359296 bp Feature: domain Description: YccC Location: 1 358258-1 359296 bp Feature: gene Location: 2719590-2720855 bp Feature: domain Description: umuC Location: 2719593-2720853 bp Feature: domain Description: umuC Location: 271 9593-2720853 bp Feature: gene Location: 2720858-2721277 bp Feature: domain Description: PRK10276 Location: 2720861-2721272 bp Feature: domain Description: PRK1 0276 Location: 2720861 -2721 272 bp Feature: gene Location: 2721356-2722840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2721758-2722448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2721 758-2722448 bp Feature: gene Location: 2723458-2723700 bp Feature: domain Description: DinI Location: 2723509-2723689 bp Feature: domain Description: DinI Location: 2723509-2723689 bp Feature: gene Location: 2723871-2725010 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2724054-2724954 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2724054-2724954 bp Feature: gene Location: 3061679-3062614 bp Feature: domain Description: Phage_CI_repr Location: 3061763-3061946 bp Feature: domain Description: Phage_CI_repr Location: 3061 763-3061 946 bp Feature: domain Description: Phage_CI_repr Location: 3062075-3062267 bp Feature: domain Description: Phage_CI_repr Location: 3062075-3062267 bp Feature: domain Description: Phage_CI_C Location: 3062294-3062588 bp Feature: domain Description: Phage_CI_C Location: 3062294-3062588 bp Feature: gene Location: 3062626-3063570 bp Feature: gene Location: 3063669-3065153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064071-3064761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064071 -3064761 bp Feature: gene Location: 3065572-3066624 bp Feature: domain Description: int Location: 3065575-3066574 bp Feature: domain Description: int Location: 3065575-3066574 bp Feature: gene Location: 3066747-3067310 bp Feature: domain Description: YbjK Location: 3066753-3067290 bp Feature: domain Description: YbjK Location: 3066753-3067290 bp Feature: gene Location: 3505452-3505769 bp Feature: domain Description: PRK10276 Location: 3505458-3505572 bp Feature: domain Description: PRK1 0276 Location: 3505458-3505572 bp Feature: domain Description: PRK10276 Location: 3505599-3505668 bp Feature: domain Description: PRK1 0276 Location: 3505599-3505668 bp Feature: gene Location: 3505769-3506008 bp Feature: gene Location: 3506086-3507570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3506488-3507178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3506488-35071 78 bp Feature: gene Location: 3508023-3508232 bp Feature: gene Location: 3508229-3508960 bp Feature: domain Description: Laminin_G_3 Location: 3508550-3508904 bp Feature: domain Description: Laminin_G_3 Location: 3508550-3508904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022)
Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), Laminin_G_3 (pfam13385)

Seq: KK036896.1 Klebsiella pneumoniae BIDMC 1 genomic scaffold adjGv-supercont2.3, whole genome shotgun sequence (221465 bp)
Overview 1 RT 1: 1-3482 bp Neighborhood of RT #1 [1, 3487] RVT-GII PRK10276 umuC Feature: gene Location: 1-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1093 bp Feature: gene Location: 1791-2216 bp Feature: domain Description: PRK10276 Location: 1794-2202 bp Feature: domain Description: PRK102 76 Location: 1794-2 2 02 bp Feature: gene Location: 2216-3487 bp Feature: domain Description: umuC Location: 2219-3482 bp Feature: domain Description: umuC Location: 2 2 19-3482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)