myRT

myRT report for GCA_000568385.1_Halomonas_isolate_BC04

Download annotations/find similar RTs

Seq: AZQX01000416.1 Halomonas sp. BC04 BC04_c9, whole genome shotgun sequence (13998 bp)
Overview 1 RT 1: 3607-5803 bp Neighborhood of RT #1 [3607, 5803] MarR RVT-Retrons Feature: gene Location: 3607-3789 bp Feature: gene Location: 3796-4185 bp Feature: domain Description: MarR Location: 3916-4174 bp Feature: domain Description: MarR Location: 391 6-41 74 bp Feature: gene Location: 4199-5155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4349-4922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4349-4922 bp Feature: gene Location: 5155-5268 bp Feature: gene Location: 5486-5803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), RVT-Retrons

Seq: AZQX01000348.1 Halomonas sp. BC04 BC04_c66, whole genome shotgun sequence (59581 bp)
Overview 1 RT 1: 451-5972 bp Neighborhood of RT #1 [451, 6091] EamA RVT-DGRs BCCT Feature: gene Location: 451-1131 bp Feature: gene Location: 1220-2140 bp Feature: domain Description: EamA Location: 1232-1448 bp Feature: domain Description: EamA Location: 12 32 -1448 bp Feature: gene Location: 2730-3554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2736-3378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 736-3378 bp Feature: gene Location: 3791-4015 bp Feature: gene Location: 4463-6091 bp Feature: domain Description: BCCT Location: 4514-5972 bp Feature: domain Description: BCCT Location: 4514-5972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EamA (pfam00892), RVT-DGRs, BCCT (pfam02028)

Seq: AZQX01000391.1 Halomonas sp. BC04 BC04_c8, whole genome shotgun sequence (31236 bp)
Overview 1 RT 1: 340-5249 bp Neighborhood of RT #1 [340, 5407] DDE_Tnp_1_4 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 Feature: gene Location: 340-1719 bp Feature: domain Description: DDE_Tnp_1_4 Location: 379-1660 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 79-1660 bp Feature: gene Location: 2170-2280 bp Feature: gene Location: 2480-3733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2702-3359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2702-3 3 59 bp Feature: domain Description: GIIM Note: maturase Location: 3437-3665 bp Feature: domain Description: GIIM Note: maturase Location: 3 43 7-3 665 bp Feature: gene Location: 3840-4349 bp Feature: domain Description: HTH_Tnp_1 Location: 3855-4011 bp Feature: domain Description: HTH_Tnp_1 Location: 3 855-4011 bp Feature: domain Description: HTH_Tnp_1 Location: 4020-4251 bp Feature: domain Description: HTH_Tnp_1 Location: 4020-4251 bp Feature: gene Location: 4376-5407 bp Feature: domain Description: HTH_23 Location: 4400-4475 bp Feature: domain Description: HTH_23 Location: 4400-4475 bp Feature: domain Description: Tra5 Location: 4649-5249 bp Feature: domain Description: Tra5 Location: 4649-5249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701), HTH_23 (pfam13384), Tra5 (COG2801)