myRT

myRT report for GCA_000568405.1_DS-2

Download annotations/find similar RTs

Seq: ARZY01000133.1 Catenovulum agarivorans DS-2 contig133, whole genome shotgun sequence (255 bp)
Overview 1 RT 1: 1-253 bp Neighborhood of RT #1 [1, 255] RVT-GII Feature: gene Location: 1-255 bp Ori: EWH08025.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ARZY01000111.1 Catenovulum agarivorans DS-2 contig111, whole genome shotgun sequence (503 bp)
Overview 1 RT 1: 161-401 bp Neighborhood of RT #1 [161, 418] RVT-GII Feature: gene Location: 161-418 bp Ori: EWH08040.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170-401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ARZY01000104.1 Catenovulum agarivorans DS-2 contig104, whole genome shotgun sequence (756 bp)
Overview 1 RT 1: 198-756 bp Neighborhood of RT #1 [198, 756] RVT-GII Feature: gene Location: 198-756 bp Ori: EWH08047.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ARZY01000081.1 Catenovulum agarivorans DS-2 contig81, whole genome shotgun sequence (2255 bp)
Overview 1 RT 1: 64-2178 bp Neighborhood of RT #1 [64, 2255] InsE PHA02517 RVT-GII Feature: gene Location: 64-351 bp Ori: EWH08081.1 Feature: domain Description: InsE Location: 67-343 bp Feature: domain Description: InsE Location: 67-34 3 bp Feature: gene Location: 411-773 bp Ori: EWH08082.1 Feature: domain Description: PHA02517 Location: 414-759 bp Feature: domain Description: PHA02517 Location: 4 14 -759 bp Feature: gene Location: 1416-2255 bp Ori: EWH08083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-2178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: ARZY01000028.1 Catenovulum agarivorans DS-2 contig28, whole genome shotgun sequence (63292 bp)
Overview 1 RT 1: 23876-31660 bp Neighborhood of RT #1 [23876, 32016] Type_II_cohesin PEP_exosort BNR_4 Big_7 Big_7 Big_7 Dockerin_II RVT-GII GIIM BNR_4 Big_7 Feature: gene Location: 23876-24409 bp Ori: EWH09164.1 Feature: domain Description: Type_II_cohesin Location: 23939-24308 bp Feature: domain Description: Type_II_cohesin Location: 23939-24308 bp Feature: domain Description: PEP_exosort Location: 24335-24404 bp Feature: domain Description: PEP_exosort Location: 24335 -24404 bp Feature: gene Location: 24472-27531 bp Ori: EWH09165.1 Feature: domain Description: BNR_4 Location: 24742-25681 bp Feature: domain Description: BNR_4 Location: 24742-25 681 bp Feature: domain Description: Big_7 Location: 26032-26182 bp Feature: domain Description: Big_7 Location: 26032-26182 bp Feature: domain Description: Big_7 Location: 26410-26641 bp Feature: domain Description: Big_7 Location: 26410-26641 bp Feature: domain Description: Big_7 Location: 26737-26989 bp Feature: domain Description: Big_7 Location: 26737-26989 bp Feature: domain Description: Dockerin_II Location: 27355-27487 bp Feature: domain Description: Dockerin_II Location: 2735 5 -27487 bp Feature: gene Location: 27846-29114 bp Ori: EWH09166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28059-28680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2805 9-28680 bp Feature: domain Description: GIIM Note: maturase Location: 28725-28944 bp Feature: domain Description: GIIM Note: maturase Location: 28725 -28944 bp Feature: gene Location: 29296-29496 bp Feature: gene Location: 29911-32016 bp Ori: EWH09168.1 Feature: domain Description: BNR_4 Location: 30163-31099 bp Feature: domain Description: BNR_4 Location: 30163-31099 bp Feature: domain Description: Big_7 Location: 31483-31660 bp Feature: domain Description: Big_7 Location: 31483-31660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Type_II_cohesin (cd08547), PEP_exosort (TIGR02595), BNR_4 (pfam15892), Big_7 (pfam17957), Dockerin_II (cd14254), RVT-GII, GIIM (pfam08388)

Seq: ARZY01000073.1 Catenovulum agarivorans DS-2 contig73, whole genome shotgun sequence (3401 bp)
Overview 1 RT 1: 91-3294 bp Neighborhood of RT #1 [91, 3294] RVT-GII GIIM 2a38 Feature: gene Location: 91-1386 bp Ori: EWH08101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346 -1018 bp Feature: domain Description: GIIM Note: maturase Location: 1096-1306 bp Feature: domain Description: GIIM Note: maturase Location: 1096 -1306 bp Feature: gene Location: 1592-2908 bp Ori: EWH08102.1 Feature: domain Description: 2a38 Location: 1685-2825 bp Feature: domain Description: 2a38 Location: 16 85-2825 bp Feature: gene Location: 3118-3294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), 2a38 (TIGR00933)