myRT

myRT report for GCA_000571935.1_Rf007c

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Seq: ATAX01000036.1 Ruminococcus flavefaciens 007c Rf007c_contig00937, whole genome shotgun sequence (267205 bp)
Overview 1 RT 1: 153298-157908 bp Neighborhood of RT #1 [153298, 157908] RpoE RVT-Retrons Hydrolase_4 Hydrolase_4 Feature: gene Location: 153298-153618 bp Feature: gene Location: 154190-155095 bp Feature: domain Description: RpoE Location: 154232-154649 bp Feature: domain Description: RpoE Location: 1 54232-1 54649 bp Feature: gene Location: 155428-156381 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155575-156127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 55575-1 561 27 bp Feature: gene Location: 156393-157448 bp Feature: domain Description: Hydrolase_4 Location: 156636-156951 bp Feature: domain Description: Hydrolase_4 Location: 1 56636-1 56951 bp Feature: domain Description: Hydrolase_4 Location: 157086-157164 bp Feature: domain Description: Hydrolase_4 Location: 1 57086-1 571 64 bp Feature: gene Location: 157609-157908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-Retrons, Hydrolase_4 (pfam12146)

Seq: ATAX01000003.1 Ruminococcus flavefaciens 007c Rf007c_contig00011, whole genome shotgun sequence (155039 bp)
Overview 1 RT 1: 4583-9935 bp Neighborhood of RT #1 [4583, 9958] Maff2 TraG-D_C RVT-GII HNHc VirD4 VirD4 DUF3801 Feature: gene Location: 4583-5002 bp Feature: domain Description: Maff2 Location: 4784-4988 bp Feature: domain Description: Maff2 Location: 4784-4988 bp Feature: gene Location: 5065-5748 bp Feature: domain Description: TraG-D_C Location: 5098-5419 bp Feature: domain Description: TraG-D_C Location: 5098-5419 bp Feature: gene Location: 5866-7314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878-6484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878-6484 bp Feature: domain Description: HNHc Note: nucleases Location: 7045-7180 bp Feature: domain Description: HNHc Note: nucleases Location: 7045-7180 bp Feature: gene Location: 7903-9375 bp Feature: domain Description: VirD4 Location: 8155-8473 bp Feature: domain Description: VirD4 Location: 8155-8473 bp Feature: domain Description: VirD4 Location: 8578-9334 bp Feature: domain Description: VirD4 Location: 8578-9334 bp Feature: gene Location: 9479-9958 bp Feature: domain Description: DUF3801 Location: 9560-9935 bp Feature: domain Description: DUF3801 Location: 9560-9935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507), VirD4 (COG3505), DUF3801 (pfam12687)