myRT

myRT report for GCA_000577295.1_SD_CC_1b

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Seq: CBXG010000004.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000043, whole genome shotgun sequence (59833 bp)
Overview 1 RT 1: 428-5404 bp Neighborhood of RT #1 [428, 5418] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 428-598 bp Ori: CDM02689.1 Feature: domain Description: DUF3875 Location: 437-593 bp Feature: domain Description: DUF3875 Location: 437-593 bp Feature: gene Location: 695-2524 bp Ori: CDM02690.1 Feature: domain Description: Bac_Flav_CT_G Location: 698-2510 bp Feature: domain Description: Bac_Flav_CT_G Location: 698-251 0 bp Feature: gene Location: 3155-4882 bp Ori: CDM02691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335-4157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335-41 57 bp Feature: domain Description: Intron_maturas2 Location: 4232-4547 bp Feature: domain Description: Intron_maturas2 Location: 4232-4547 bp Feature: domain Description: HNHc Note: nucleases Location: 4703-4853 bp Feature: domain Description: HNHc Note: nucleases Location: 4703-4853 bp Feature: gene Location: 4975-5238 bp Ori: CDM02692.1 Feature: domain Description: Bac_Flav_CT_G Location: 4987-5236 bp Feature: domain Description: Bac_Flav_CT_G Location: 4987-5236 bp Feature: gene Location: 5245-5418 bp Ori: CDM02693.1 Feature: domain Description: Bac_Flav_CT_G Location: 5248-5404 bp Feature: domain Description: Bac_Flav_CT_G Location: 5248-5404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CBXG010000016.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000058, whole genome shotgun sequence (455905 bp)
Overview 1 RT 1: 394693-398718 bp Neighborhood of RT #1 [394693, 398747] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 394693-394944 bp Feature: gene Location: 395707-395985 bp Feature: gene Location: 395948-397369 bp Ori: CDM03871.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 396323-397049 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39632 3-397049 bp Feature: gene Location: 397384-397791 bp Ori: CDM03872.1 Feature: domain Description: Avd_like Location: 397417-397726 bp Feature: domain Description: Avd_like Location: 397417-39772 6 bp Feature: gene Location: 397938-398747 bp Ori: CDM03873.1 Feature: domain Description: DUF1566 Location: 398469-398718 bp Feature: domain Description: DUF1566 Location: 398469-398718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: CBXG010000056.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000051, whole genome shotgun sequence (103853 bp)
Overview 1 RT 1: 158-4057 bp 2 RT 2: 70474-73299 bp Neighborhood of RT #1 [158, 4057] DUF4134 RVT_N RVT-GII GIIM DUF4134 Neighborhood of RT #2 [70474, 73334] RVT-GII GDPD_like_2 Feature: gene Location: 158-394 bp Ori: CDM07647.1 Feature: domain Description: DUF4134 Location: 299-389 bp Feature: domain Description: DUF413 4 Location: 299-3 89 bp Feature: gene Location: 397-2052 bp Ori: CDM07648.1 Feature: domain Description: RVT_N Location: 454-691 bp Feature: domain Description: RVT_N Location: 454-691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1447-1678 bp Feature: domain Description: GIIM Note: maturase Location: 1447-1678 bp Feature: gene Location: 2668-2784 bp Ori: CDM07649.1 Feature: domain Description: DUF4134 Location: 2674-2770 bp Feature: domain Description: DUF413 4 Location: 2674-2770 bp Feature: gene Location: 3305-4057 bp Feature: gene Location: 70474-70590 bp Feature: gene Location: 70665-70808 bp Feature: gene Location: 71251-71439 bp Ori: CDM07724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71344-71413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 713 44-71413 bp Feature: gene Location: 72365-72517 bp Feature: gene Location: 72573-73334 bp Ori: CDM07726.1 Feature: domain Description: GDPD_like_2 Location: 72642-73299 bp Feature: domain Description: GDPD_like_2 Location: 72642-73 299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), GDPD_like_2 (cd08582)

Seq: CBXG010000054.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000049, whole genome shotgun sequence (202253 bp)
Overview 1 RT 1: 188706-200192 bp Neighborhood of RT #1 [188706, 200192] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 188706-190403 bp Ori: CDM07425.1 Feature: domain Description: rpsA Location: 188775-190353 bp Feature: domain Description: rpsA Location: 188775-190353 bp Feature: gene Location: 190485-196541 bp Ori: CDM07426.1 Feature: domain Description: DUF4011 Location: 191730-192243 bp Feature: domain Description: DUF4 011 Location: 191730-19224 3 bp Feature: domain Description: DEXXQc_SF1 Location: 192582-193011 bp Feature: domain Description: DEXXQc_SF1 Location: 192582-193011 bp Feature: domain Description: DEXXQc_SF1 Location: 194013-194769 bp Feature: domain Description: DEXXQc_SF1 Location: 194 013-194 769 bp Feature: domain Description: TIGR00376 Location: 194898-195288 bp Feature: domain Description: TIGR00376 Location: 194 898-195288 bp Feature: domain Description: MTES_1575 Location: 195441-195726 bp Feature: domain Description: MTES_1575 Location: 1954 4 1-195726 bp Feature: domain Description: DUF3320 Location: 196056-196191 bp Feature: domain Description: DUF3320 Location: 196056-196191 bp Feature: gene Location: 196592-197722 bp Ori: CDM07427.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196913-197456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196913-1974 56 bp Feature: gene Location: 197930-200041 bp Feature: gene Location: 200052-200192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: CBXG010000033.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000012, whole genome shotgun sequence (68824 bp)
Overview 1 RT 1: 58325-61965 bp Neighborhood of RT #1 [58325, 62060] dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 58325-58516 bp Feature: gene Location: 58623-58781 bp Ori: CDM05247.1 Feature: domain Description: dnaG Location: 58692-58773 bp Feature: domain Description: dnaG Location: 5 8692-5 8773 bp Feature: gene Location: 59331-61160 bp Ori: CDM05248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59616-60438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 9616-60438 bp Feature: domain Description: Intron_maturas2 Location: 60507-60816 bp Feature: domain Description: Intron_maturas2 Location: 605 07-60816 bp Feature: gene Location: 61309-61458 bp Feature: gene Location: 61500-62060 bp Ori: CDM05250.1 Feature: domain Description: Toprim_2 Location: 61683-61965 bp Feature: domain Description: Toprim_2 Location: 61683-61965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: CBXG010000046.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000060, whole genome shotgun sequence (560367 bp)
Overview 1 RT 1: 219538-225234 bp 2 RT 2: 449653-453708 bp Neighborhood of RT #1 [219538, 225320] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #2 [449653, 453708] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 219538-221241 bp Ori: CDM06358.1 Feature: domain Description: REC Location: 220357-220588 bp Feature: domain Description: REC Location: 220357-220588 bp Feature: gene Location: 221238-221882 bp Feature: gene Location: 221860-224079 bp Ori: CDM06360.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 222061-222646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22206 1-2226 46 bp Feature: gene Location: 224289-224426 bp Feature: gene Location: 224490-225320 bp Ori: CDM06362.1 Feature: domain Description: Phage_int_SAM_5 Location: 224496-224631 bp Feature: domain Description: Phage_int_SAM_5 Location: 224496 -2246 31 bp Feature: domain Description: INTN1_C_like Location: 224712-225234 bp Feature: domain Description: INTN1_C_like Location: 224712-225234 bp Feature: gene Location: 449653-450462 bp Ori: CDM06559.1 Feature: domain Description: DUF1566 Location: 450184-450433 bp Feature: domain Description: DUF156 6 Location: 450184-450433 bp Feature: gene Location: 450609-451016 bp Ori: CDM06560.1 Feature: domain Description: Avd_like Location: 450642-450951 bp Feature: domain Description: Avd_like Location: 4506 42-450951 bp Feature: gene Location: 451031-452452 bp Ori: CDM06561.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 451406-452132 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 451406 -452132 bp Feature: gene Location: 452415-452693 bp Feature: gene Location: 453181-453708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: CBXG010000049.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000056, whole genome shotgun sequence (421733 bp)
Overview 1 RT 1: 18007-25108 bp Neighborhood of RT #1 [18007, 25108] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 18007-18633 bp Ori: CDM06715.1 Feature: domain Description: DUF4141 Location: 18016-18172 bp Feature: domain Description: DUF4141 Location: 18016-1817 2 bp Feature: gene Location: 18645-21341 bp Ori: CDM06716.1 Feature: domain Description: Bac_Flav_CT_G Location: 18831-21315 bp Feature: domain Description: Bac_Flav_CT_G Location: 18831-21315 bp Feature: gene Location: 21552-23261 bp Ori: CDM06717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21717-22536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217 17 -22536 bp Feature: domain Description: Intron_maturas2 Location: 22611-22938 bp Feature: domain Description: Intron_maturas2 Location: 22611-22938 bp Feature: domain Description: HNHc Note: nucleases Location: 23091-23238 bp Feature: domain Description: HNHc Note: nucleases Location: 23091-23238 bp Feature: gene Location: 23979-24365 bp Ori: CDM06718.1 Feature: domain Description: DUF4134 Location: 24087-24360 bp Feature: domain Description: DUF4134 Location: 24087 -24360 bp Feature: gene Location: 24446-25108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: CBXG010000001.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000042, whole genome shotgun sequence (121651 bp)
Overview 1 RT 1: 19688-23269 bp Neighborhood of RT #1 [19688, 23271] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 19688-20116 bp Feature: gene Location: 20373-20591 bp Ori: CDM02479.1 Feature: domain Description: DUF4134 Location: 20394-20577 bp Feature: domain Description: DUF4134 Location: 20394-20577 bp Feature: gene Location: 21207-22862 bp Ori: CDM02480.1 Feature: domain Description: RVT_N Location: 21264-21501 bp Feature: domain Description: RVT_N Location: 21264-21501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21552-22200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21552-22200 bp Feature: domain Description: GIIM Note: maturase Location: 22257-22488 bp Feature: domain Description: GIIM Note: maturase Location: 22257-2248 8 bp Feature: gene Location: 22865-23101 bp Ori: CDM02481.1 Feature: domain Description: DUF4134 Location: 23006-23096 bp Feature: domain Description: DUF4134 Location: 23006-23096 bp Feature: gene Location: 23125-23271 bp Ori: CDM02482.1 Feature: domain Description: DUF4133 Location: 23143-23269 bp Feature: domain Description: DUF4133 Location: 23143-23269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: CBXG010000018.1 Bacteroides xylanisolvens SD CC 1b WGS project CBXG000000000 data, contig 000034, whole genome shotgun sequence (22118 bp)
Overview 1 RT 1: 18264-21956 bp Neighborhood of RT #1 [18264, 21961] DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 18264-19004 bp Feature: gene Location: 19206-19451 bp Ori: CDM04022.1 Feature: domain Description: DUF4134 Location: 19260-19437 bp Feature: domain Description: DUF4134 Location: 19 260-19 437 bp Feature: gene Location: 20067-21722 bp Ori: CDM04023.1 Feature: domain Description: RVT_N Location: 20124-20361 bp Feature: domain Description: RVT_N Location: 20124-20361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20412-21060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20412-21060 bp Feature: domain Description: GIIM Note: maturase Location: 21117-21348 bp Feature: domain Description: GIIM Note: maturase Location: 21117-21348 bp Feature: gene Location: 21725-21961 bp Ori: CDM04024.1 Feature: domain Description: DUF4134 Location: 21866-21956 bp Feature: domain Description: DUF4134 Location: 21866-219 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)