myRT

myRT report for GCA_000577615.1_RV1423

Download annotations/find similar RTs

Seq: CBXX010000004.1 Herbaspirillum sp. RV1423 WGS project CBXX000000000 data, contig out4, whole genome shotgun sequence (414023 bp)
Overview 1 RT 1: 166539-173367 bp Neighborhood of RT #1 [166539, 173381] PRK00098 RVT_N RVT-GII GIIM HNHc PRK00779 PRK05370 Feature: gene Location: 166539-166901 bp Feature: gene Location: 166919-167824 bp Feature: domain Description: PRK00098 Location: 166949-167816 bp Feature: domain Description: PRK00098 Location: 1 66949-1 6781 6 bp Feature: gene Location: 169247-170950 bp Feature: RT Description: RVT_N Location: 169307-169550 bp Feature: RT Description: RVT_N Location: 1 69307-1 69550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169595-170243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69595-1 70243 bp Feature: domain Description: GIIM Note: maturase Location: 170297-170528 bp Feature: domain Description: GIIM Note: maturase Location: 1 70297-1 70528 bp Feature: domain Description: HNHc Note: nucleases Location: 170759-170912 bp Feature: domain Description: HNHc Note: nucleases Location: 1 70759-1 7091 2 bp Feature: gene Location: 170962-171999 bp Feature: domain Description: PRK00779 Location: 171088-171979 bp Feature: domain Description: PRK00779 Location: 1 71 088-1 71 979 bp Feature: gene Location: 172038-173381 bp Feature: domain Description: PRK05370 Location: 172041-173367 bp Feature: domain Description: PRK05370 Location: 1 72041 -1 73367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00098 (GTPase RsgA; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00779 (ornithine carbamoyltransferase; Provisional), PRK05370 (argininosuccinate synthase; Validated)

Seq: CBXX010000030.1 Herbaspirillum sp. RV1423 WGS project CBXX000000000 data, contig out30, whole genome shotgun sequence (60070 bp)
Overview 1 RT 1: 55821-59972 bp Neighborhood of RT #1 [55821, 59989] PDDEXK_1 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 55821-57068 bp Feature: gene Location: 57094-57894 bp Feature: domain Description: PDDEXK_1 Location: 57136-57880 bp Feature: domain Description: PDDEXK_1 Location: 57136-57880 bp Feature: gene Location: 57891-59237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58320-59085 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5832 0-59085 bp Feature: gene Location: 59230-59604 bp Feature: domain Description: Avd_like Location: 59257-59563 bp Feature: domain Description: Avd_like Location: 592 57-59563 bp Feature: gene Location: 59624-59989 bp Feature: domain Description: DUF1566 Location: 59756-59972 bp Feature: domain Description: DUF1566 Location: 59756-59972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_1 (pfam12705), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)